Task 84726380

Name	ebola_GP_v1_sidock_00438032_r3_s-20.0_0
Workunit	55957396
Created	4 Oct 2024, 1:36:22 UTC
Sent	4 Oct 2024, 17:20:22 UTC
Report deadline	6 Oct 2024, 17:20:22 UTC
Received	5 Oct 2024, 0:47:26 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	61401
Run time	1 hours 55 min 44 sec
CPU time	1 hours 53 min 36 sec
Validate state	Valid
Credit	73.49
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	97.91 MB
Peak swap size	104.04 MB
Peak disk usage	16.77 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
19:20:25 (9653): wrapper (7.17.26016): starting
19:20:25 (9653): wrapper (7.17.26016): starting
19:20:25 (9653): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/35/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:09:44 (5652): wrapper (7.17.26016): starting
22:09:45 (5652): wrapper (7.17.26016): starting
22:09:45 (5652): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/35/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55863092af8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f7ccfd6a420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f7ccfba700b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f7ccfb86859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f7ccfbf126e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f7ccfbf92fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f7ccfbfab2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5586309473dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5586309668e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f7ccfba7090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f7ccfc4123f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f7ccfc46ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f7ccfc79a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55863093cadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x558630909784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f7ccfb88083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x558630905a3a]

Exiting...
22:13:30 (4552): wrapper (7.17.26016): starting
22:13:30 (4552): wrapper (7.17.26016): starting
22:13:30 (4552): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/35/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:48:24 (5877): wrapper (7.17.26016): starting
00:48:24 (5877): wrapper (7.17.26016): starting
00:48:24 (5877): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/35/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56117c6ebf8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fdc012bb420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fdc010f800b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fdc010d7859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7fdc0114226e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7fdc0114a2fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7fdc0114bb2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56117c7083dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56117c7278e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fdc010f8090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fdc0119223f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fdc01197ec7]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x7fdc01197dfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x56117c6fda9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56117c6ca784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fdc010d9083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56117c6c6a3a]

Exiting...
22:58:47 (5854): wrapper (7.17.26016): starting
22:58:48 (5854): wrapper (7.17.26016): starting
22:58:48 (5854): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/35/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:05:10 (438164): wrapper (7.17.26016): starting
01:05:10 (438164): wrapper (7.17.26016): starting
01:05:10 (438164): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/35/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:16:05 (438164): cmdock exited; CPU time 3064.646644
02:16:05 (438164): called boinc_finish(0)

</stderr_txt>
]]>