Task 84726377

Name	ebola_GP_v1_sidock_00438035_r2_s-20.0_0
Workunit	55957407
Created	4 Oct 2024, 1:36:22 UTC
Sent	4 Oct 2024, 17:20:21 UTC
Report deadline	6 Oct 2024, 17:20:21 UTC
Received	5 Oct 2024, 1:49:07 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	61401
Run time	1 hours 50 min 50 sec
CPU time	1 hours 48 min 46 sec
Validate state	Valid
Credit	71.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	97.89 MB
Peak swap size	104.21 MB
Peak disk usage	16.88 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
19:20:37 (9732): wrapper (7.17.26016): starting
19:20:38 (9732): wrapper (7.17.26016): starting
19:20:38 (9732): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/60/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:09:44 (5689): wrapper (7.17.26016): starting
22:09:45 (5689): wrapper (7.17.26016): starting
22:09:45 (5689): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/60/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x555b63a67f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fd9172b4420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fd9170f100b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fd9170d0859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7fd91713b26e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7fd9171432fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7fd917144b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x555b63a843dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x555b63aa38e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fd9170f1090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fd91718b23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fd917190ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fd9171c3a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x555b63a79adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x555b63a46784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fd9170d2083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x555b63a42a3a]

Exiting...
22:13:30 (4577): wrapper (7.17.26016): starting
22:13:30 (4577): wrapper (7.17.26016): starting
22:13:30 (4577): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/60/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:48:24 (5924): wrapper (7.17.26016): starting
00:48:24 (5924): wrapper (7.17.26016): starting
00:48:24 (5924): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/60/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (19 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5584090f8f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f757cdf4420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f757cc3100b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f757cc10859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f757cc7b26e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f757cc832fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f757cc84b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5584091153dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5584091348e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f757cc31090]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x5584090f3ec0]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f757cdf4420]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f757cccb23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f757ccd0ec7]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x7f757ccd0dfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x55840910aa9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5584090d7784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f757cc12083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5584090d3a3a]

Exiting...
22:58:48 (5979): wrapper (7.17.26016): starting
22:58:48 (5979): wrapper (7.17.26016): starting
22:58:48 (5979): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/60/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:37:26 (440065): wrapper (7.17.26016): starting
01:37:27 (440065): wrapper (7.17.26016): starting
01:37:27 (440065): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/60/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:00:12 (440065): cmdock exited; CPU time 2753.889893
03:00:12 (440065): called boinc_finish(0)

</stderr_txt>
]]>