Task 84726351

Name	ebola_GP_v1_sidock_00318847_r4_s-20.0_2
Workunit	55460657
Created	4 Oct 2024, 1:36:21 UTC
Sent	4 Oct 2024, 17:19:47 UTC
Report deadline	6 Oct 2024, 17:19:47 UTC
Received	5 Oct 2024, 0:47:26 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	61401
Run time	2 hours 5 min 17 sec
CPU time	2 hours 3 min 46 sec
Validate state	Valid
Credit	16.93
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	97.89 MB
Peak swap size	104.18 MB
Peak disk usage	16.90 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
19:19:59 (9612): wrapper (7.17.26016): starting
19:19:59 (9612): wrapper (7.17.26016): starting
19:19:59 (9612): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:09:44 (5640): wrapper (7.17.26016): starting
22:09:45 (5640): wrapper (7.17.26016): starting
22:09:45 (5640): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55e59c0eff8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fd43fbe3420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fd43fa2000b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fd43f9ff859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7fd43fa6a26e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7fd43fa722fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7fd43fa73b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55e59c10c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55e59c12b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fd43fa20090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fd43faba23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fd43fabfec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fd43faf2a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55e59c101adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55e59c0ce784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fd43fa01083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55e59c0caa3a]

Exiting...
22:13:30 (4540): wrapper (7.17.26016): starting
22:13:30 (4540): wrapper (7.17.26016): starting
22:13:30 (4540): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:48:24 (5865): wrapper (7.17.26016): starting
00:48:24 (5865): wrapper (7.17.26016): starting
00:48:24 (5865): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5559e10c4f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f5ab70f1420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f5ab6f2e00b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f5ab6f0d859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f5ab6f7826e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f5ab6f802fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f5ab6f81b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5559e10e13dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5559e11008e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f5ab6f2e090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f5ab6fc823f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f5ab6fcdec7]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x7f5ab6fcddfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x5559e10d6a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5559e10a3784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f5ab6f0f083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5559e109fa3a]

Exiting...
22:58:47 (5841): wrapper (7.17.26016): starting
22:58:48 (5841): wrapper (7.17.26016): starting
22:58:48 (5841): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:05:10 (438152): wrapper (7.17.26016): starting
01:05:10 (438152): wrapper (7.17.26016): starting
01:05:10 (438152): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:34:09 (438152): cmdock exited; CPU time 3671.838544
02:34:09 (438152): called boinc_finish(0)

</stderr_txt>
]]>