Task 84645677

Name ebola_GP_v1_sidock_00418311_r3_s-20.0_0
Workunit 55878512
Created 3 Oct 2024, 5:28:16 UTC
Sent 3 Oct 2024, 22:43:04 UTC
Report deadline 5 Oct 2024, 22:43:04 UTC
Received 4 Oct 2024, 9:47:26 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 19974
Run time 1 hours 16 min 30 sec
CPU time 1 hours 15 min 47 sec
Validate state Valid
Credit 43.28
Device peak FLOPS 8.56 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 97.38 MB
Peak swap size 103.57 MB
Peak disk usage 16.79 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
00:49:45 (21303): wrapper (7.17.26016): starting
00:49:45 (21303): wrapper (7.17.26016): starting
00:49:45 (21303): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x556ee183ff8c]
/usr/lib/libc.so.6(+0x3d1d0) [0x7fac55ed61d0]
/usr/lib/libc.so.6(__libc_free+0x25) [0x7fac55f3e575]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x556ee185c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x556ee187b8e4]
/usr/lib/libc.so.6(+0x3d1d0) [0x7fac55ed61d0]
/usr/lib/libc.so.6(clock_nanosleep+0x63) [0x7fac55f7a733]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7fac55f86827]
/usr/lib/libc.so.6(usleep+0x4a) [0x7fac55fb1f9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x556ee1851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x556ee181e784]
/usr/lib/libc.so.6(+0x25e08) [0x7fac55ebee08]
/usr/lib/libc.so.6(__libc_start_main+0x8c) [0x7fac55ebeecc]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x556ee181aa3a]

Exiting...
10:23:33 (6404): wrapper (7.17.26016): starting
10:23:33 (6404): wrapper (7.17.26016): starting
10:23:33 (6404): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:41:59 (6404): cmdock exited; CPU time 4466.223885
11:41:59 (6404): called boinc_finish(0)

</stderr_txt>
]]>


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