Task 84644945

Name ebola_GP_v1_sidock_00418141_r4_s-20.0_0
Workunit 55877833
Created 3 Oct 2024, 5:27:36 UTC
Sent 3 Oct 2024, 22:32:40 UTC
Report deadline 5 Oct 2024, 22:32:40 UTC
Received 4 Oct 2024, 9:38:50 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 19974
Run time 1 hours 13 min 58 sec
CPU time 1 hours 12 min 54 sec
Validate state Valid
Credit 41.86
Device peak FLOPS 8.56 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 97.66 MB
Peak swap size 104.45 MB
Peak disk usage 16.73 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
00:40:56 (19962): wrapper (7.17.26016): starting
00:40:56 (19962): wrapper (7.17.26016): starting
00:40:56 (19962): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55996543ff8c]
/usr/lib/libc.so.6(+0x3d1d0) [0x7f2c53c691d0]
/usr/lib/libc.so.6(__libc_free+0x25) [0x7f2c53cd1575]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55996545c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55996547b8e4]
/usr/lib/libc.so.6(+0x3d1d0) [0x7f2c53c691d0]
/usr/lib/libc.so.6(clock_nanosleep+0x63) [0x7f2c53d0d733]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7f2c53d19827]
/usr/lib/libc.so.6(usleep+0x4a) [0x7f2c53d44f9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x559965451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55996541e784]
/usr/lib/libc.so.6(+0x25e08) [0x7f2c53c51e08]
/usr/lib/libc.so.6(__libc_start_main+0x8c) [0x7f2c53c51ecc]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55996541aa3a]

Exiting...
10:23:33 (6399): wrapper (7.17.26016): starting
10:23:33 (6399): wrapper (7.17.26016): starting
10:23:33 (6399): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:30:29 (6399): cmdock exited; CPU time 3853.371997
11:30:29 (6399): called boinc_finish(0)

</stderr_txt>
]]>


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