Task 83847442

Name	ebola_GP_v1_sidock_00234795_r2_s-20.0_0
Workunit	55104447
Created	24 Sep 2024, 11:34:19 UTC
Sent	25 Sep 2024, 3:07:43 UTC
Report deadline	27 Sep 2024, 3:07:43 UTC
Received	27 Sep 2024, 18:54:54 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	29913
Run time	2 hours 45 min 13 sec
CPU time	2 hours 41 min 46 sec
Validate state	Valid
Credit	109.26
Device peak FLOPS	6.12 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	97.70 MB
Peak swap size	104.45 MB
Peak disk usage	16.92 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
04:04:55 (6633): wrapper (7.17.26016): starting
04:04:55 (6633): wrapper (7.17.26016): starting
04:04:55 (6633): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x5b0676e3ff8c]
/usr/lib/libc.so.6(+0x3d1d0) [0x76aa6c48f1d0]
/usr/lib/libc.so.6(__libc_free+0x25) [0x76aa6c4f7575]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x5b0676e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x5b0676e7b8e4]
/usr/lib/libc.so.6(+0x3d1d0) [0x76aa6c48f1d0]
/usr/lib/libc.so.6(clock_nanosleep+0x63) [0x76aa6c533733]
/usr/lib/libc.so.6(nanosleep+0x17) [0x76aa6c53f827]
/usr/lib/libc.so.6(usleep+0x4a) [0x76aa6c56af9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x5b0676e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x5b0676e1e784]
/usr/lib/libc.so.6(+0x25e08) [0x76aa6c477e08]
/usr/lib/libc.so.6(__libc_start_main+0x8c) [0x76aa6c477ecc]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x5b0676e1aa3a]

Exiting...
16:51:10 (7742): wrapper (7.17.26016): starting
16:51:10 (7742): wrapper (7.17.26016): starting
16:51:10 (7742): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x603ba0c3ff8c]
/usr/lib/libc.so.6(+0x3d1d0) [0x7850789831d0]
/usr/lib/libc.so.6(__libc_free+0x25) [0x7850789eb575]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x603ba0c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x603ba0c7b8e4]
/usr/lib/libc.so.6(+0x3d1d0) [0x7850789831d0]
/usr/lib/libc.so.6(clock_nanosleep+0x63) [0x785078a27733]
/usr/lib/libc.so.6(nanosleep+0x17) [0x785078a33827]
/usr/lib/libc.so.6(usleep+0x4a) [0x785078a5ef9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x603ba0c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x603ba0c1e784]
/usr/lib/libc.so.6(+0x25e08) [0x78507896be08]
/usr/lib/libc.so.6(__libc_start_main+0x8c) [0x78507896becc]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x603ba0c1aa3a]

Exiting...
04:09:01 (7557): wrapper (7.17.26016): starting
04:09:01 (7557): wrapper (7.17.26016): starting
04:09:01 (7557): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (22 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x59b90da3ff8c]
/usr/lib/libc.so.6(+0x3d1d0) [0x79c17c2441d0]
/usr/lib/libc.so.6(+0x963f4) [0x79c17c29d3f4]
/usr/lib/libc.so.6(gsignal+0x20) [0x79c17c244120]
/usr/lib/libc.so.6(abort+0xdf) [0x79c17c22b4c3]
/usr/lib/libc.so.6(+0x25354) [0x79c17c22c354]
/usr/lib/libc.so.6(+0xa0765) [0x79c17c2a7765]
/usr/lib/libc.so.6(+0xa2c4c) [0x79c17c2a9c4c]
/usr/lib/libc.so.6(__libc_free+0x7e) [0x79c17c2ac5ce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x59b90da5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x59b90da7b8e4]
/usr/lib/libc.so.6(+0x3d1d0) [0x79c17c2441d0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0) [0x59b90da3aec0]
/usr/lib/libc.so.6(+0x3d1d0) [0x79c17c2441d0]
/usr/lib/libc.so.6(clock_nanosleep+0x63) [0x79c17c2e8733]
/usr/lib/libc.so.6(nanosleep+0x17) [0x79c17c2f4827]
/usr/lib/libc.so.6(usleep+0x4a) [0x79c17c31ff9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x59b90da51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x59b90da1e784]
/usr/lib/libc.so.6(+0x25e08) [0x79c17c22ce08]
/usr/lib/libc.so.6(__libc_start_main+0x8c) [0x79c17c22cecc]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x59b90da1aa3a]

Exiting...
19:39:35 (7594): wrapper (7.17.26016): starting
19:39:35 (7594): wrapper (7.17.26016): starting
19:39:35 (7594): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:54:42 (7594): cmdock exited; CPU time 4091.738471
20:54:42 (7594): called boinc_finish(0)

</stderr_txt>
]]>