Task 83458553

Name	corona_RdRp_v2_sidock_01929240_r2_s-20_3
Workunit	54054143
Created	19 Sep 2024, 19:34:26 UTC
Sent	20 Sep 2024, 6:30:49 UTC
Report deadline	28 Sep 2024, 6:30:49 UTC
Received	28 Sep 2024, 4:04:14 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	56341
Run time	2 days 23 hours 0 min 15 sec
CPU time	2 days 22 hours 35 min 29 sec
Validate state	Valid
Credit	3,114.65
Device peak FLOPS	6.52 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.78 MB
Peak swap size	200.78 MB
Peak disk usage	21.30 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
00:36:42 (172096): wrapper (7.17.26016): starting
00:36:42 (172096): wrapper (7.17.26016): starting
00:36:42 (172096): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:00:00 (1733581): wrapper (7.17.26016): starting
00:00:01 (1733581): wrapper (7.17.26016): starting
00:00:01 (1733581): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:40:36 (2503933): wrapper (7.17.26016): starting
11:40:36 (2503933): wrapper (7.17.26016): starting
11:40:36 (2503933): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:55:41 (2558050): wrapper (7.17.26016): starting
11:55:42 (2558050): wrapper (7.17.26016): starting
11:55:42 (2558050): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x5834fca3ff8c]
/usr/lib/libc.so.6(+0x3d1d0) [0x77d189d991d0]
/usr/lib/libc.so.6(+0x963f4) [0x77d189df23f4]
/usr/lib/libc.so.6(gsignal+0x20) [0x77d189d99120]
/usr/lib/libc.so.6(abort+0xdf) [0x77d189d804c3]
/usr/lib/libc.so.6(+0x25354) [0x77d189d81354]
/usr/lib/libc.so.6(+0xa0765) [0x77d189dfc765]
/usr/lib/libc.so.6(+0xa2c4c) [0x77d189dfec4c]
/usr/lib/libc.so.6(__libc_free+0x7e) [0x77d189e015ce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x5834fca5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x5834fca7b8e4]
/usr/lib/libc.so.6(+0x3d1d0) [0x77d189d991d0]
/usr/lib/libc.so.6(clock_nanosleep+0x63) [0x77d189e3d733]
/usr/lib/libc.so.6(nanosleep+0x17) [0x77d189e49827]
/usr/lib/libc.so.6(usleep+0x4a) [0x77d189e74f9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x5834fca51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x5834fca1e784]
/usr/lib/libc.so.6(+0x25e08) [0x77d189d81e08]
/usr/lib/libc.so.6(__libc_start_main+0x8c) [0x77d189d81ecc]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x5834fca1aa3a]

Exiting...
12:00:01 (11905): wrapper (7.17.26016): starting
12:00:02 (11905): wrapper (7.17.26016): starting
12:00:02 (11905): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:20:53 (23448): wrapper (7.17.26016): starting
12:20:53 (23448): wrapper (7.17.26016): starting
12:20:53 (23448): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:00:00 (558219): wrapper (7.17.26016): starting
00:00:01 (558219): wrapper (7.17.26016): starting
00:00:01 (558219): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:00:00 (1289184): wrapper (7.17.26016): starting
00:00:00 (1289184): wrapper (7.17.26016): starting
00:00:01 (1289184): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:00:00 (2037805): wrapper (7.17.26016): starting
00:00:01 (2037805): wrapper (7.17.26016): starting
00:00:01 (2037805): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:00:00 (2849416): wrapper (7.17.26016): starting
00:00:01 (2849416): wrapper (7.17.26016): starting
00:00:01 (2849416): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:00:00 (3960386): wrapper (7.17.26016): starting
00:00:00 (3960386): wrapper (7.17.26016): starting
00:00:00 (3960386): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:00:00 (887935): wrapper (7.17.26016): starting
00:00:01 (887935): wrapper (7.17.26016): starting
00:00:01 (887935): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:04:05 (887935): cmdock exited; CPU time 17777.801649
05:04:05 (887935): called boinc_finish(0)

</stderr_txt>
]]>