Task 83291074

Name corona_RdRp_v2_sidock_01953566_r1_s-20_2
Workunit 54102794
Created 16 Sep 2024, 23:43:14 UTC
Sent 17 Sep 2024, 14:04:24 UTC
Report deadline 25 Sep 2024, 14:04:24 UTC
Received 19 Sep 2024, 10:53:48 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 18 hours 16 min 53 sec
CPU time 1 days 18 hours 1 min 6 sec
Validate state Valid
Credit 1,844.27
Device peak FLOPS 6.66 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.58 MB
Peak swap size 201.17 MB
Peak disk usage 20.92 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
18:54:14 (8643): wrapper (7.17.26016): starting
18:54:14 (8643): wrapper (7.17.26016): starting
18:54:14 (8643): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55b4e8f4af8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7fafd12683c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fafd10a503b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fafd1084859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7fafd10ef29e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7fafd10f732c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7fafd10f8b5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55b4e8f673dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55b4e8f868e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7fafd10a50c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fafd113f26f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fafd1144ef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fafd117788f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55b4e8f5cadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55b4e8f29784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fafd10860b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55b4e8f25a3a]

Exiting...
15:36:29 (3364): wrapper (7.17.26016): starting
15:36:29 (3364): wrapper (7.17.26016): starting
15:36:29 (3364): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:53:37 (3364): cmdock exited; CPU time 80177.463812
13:53:37 (3364): called boinc_finish(0)

</stderr_txt>
]]>


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