Task 83290860

Name corona_RdRp_v2_sidock_01924622_r2_s-20_2
Workunit 54044907
Created 16 Sep 2024, 22:52:52 UTC
Sent 17 Sep 2024, 14:00:12 UTC
Report deadline 25 Sep 2024, 14:00:12 UTC
Received 26 Sep 2024, 7:56:52 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 43040
Run time 1 days 8 hours 42 min 25 sec
CPU time 1 days 8 hours 38 min
Validate state Task was reported too late to validate
Credit 0.00
Device peak FLOPS 7.04 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.52 MB
Peak swap size 200.95 MB
Peak disk usage 20.93 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
10:41:49 (9230): wrapper (7.17.26016): starting
10:41:49 (9230): wrapper (7.17.26016): starting
10:41:49 (9230): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5d094b83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x770fcf842520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x770fcf8969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x770fcf842476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x770fcf8287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x770fcf889676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x770fcf8a0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x770fcf8a2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x770fcf8a5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5d094b85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5d094b87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x770fcf842520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x770fcf8e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x770fcf8ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x770fcf91bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5d094b851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5d094b81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x770fcf829d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x770fcf829e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5d094b81aa3a]

Exiting...
13:33:14 (2620): wrapper (7.17.26016): starting
13:33:14 (2620): wrapper (7.17.26016): starting
13:33:14 (2620): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5a4523e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7868d7a42520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7868d7a969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7868d7a42476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7868d7a287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7868d7a89676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7868d7aa0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7868d7aa2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7868d7aa5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5a4523e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5a4523e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7868d7a42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7868d7ae57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7868d7aea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7868d7b1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5a4523e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5a4523e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7868d7a29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7868d7a29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5a4523e1aa3a]

Exiting...
10:20:11 (2618): wrapper (7.17.26016): starting
10:20:11 (2618): wrapper (7.17.26016): starting
10:20:11 (2618): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x60356423ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7419d9c42520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7419d9c969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7419d9c42476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7419d9c287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7419d9c89676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7419d9ca0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7419d9ca2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7419d9ca5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x60356425c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x60356427b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7419d9c42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7419d9ce57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7419d9cea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7419d9d1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x603564251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x60356421e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7419d9c29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7419d9c29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x60356421aa3a]

Exiting...
12:35:11 (58040): wrapper (7.17.26016): starting
12:35:11 (58040): wrapper (7.17.26016): starting
12:35:11 (58040): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x599a25c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x742a58642520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x742a586969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x742a58642476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x742a586287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x742a58689676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x742a586a0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x742a586a2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x742a586a5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x599a25c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x599a25c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x742a58642520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x742a586e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x742a586ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x742a5871bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x599a25c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x599a25c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x742a58629d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x742a58629e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x599a25c1aa3a]

Exiting...
10:02:46 (2636): wrapper (7.17.26016): starting
10:02:47 (2636): wrapper (7.17.26016): starting
10:02:47 (2636): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:56:40 (2636): cmdock exited; CPU time 3232.418331
10:56:40 (2636): called boinc_finish(0)

</stderr_txt>
]]>


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