Task 83018574
| Name | corona_RdRp_v2_sidock_01940744_r2_s-20_2 |
| Workunit | 54077151 |
| Created | 12 Sep 2024, 22:20:33 UTC |
| Sent | 13 Sep 2024, 16:52:41 UTC |
| Report deadline | 21 Sep 2024, 16:52:41 UTC |
| Received | 20 Sep 2024, 19:53:43 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 60677 |
| Run time | 2 days 4 hours 41 min 40 sec |
| CPU time | 2 days 4 hours 41 min 40 sec |
| Validate state | Valid |
| Credit | 1,537.75 |
| Device peak FLOPS | 5.83 GFLOPS |
| Application version | CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu |
| Peak working set size | 192.46 MB |
| Peak swap size | 199.57 MB |
| Peak disk usage | 20.93 MB |
Stderr output
<core_client_version>7.18.1</core_client_version> <![CDATA[ <stderr_txt> 06:41:29 (220052): wrapper (7.17.26016): starting 06:41:29 (220052): wrapper (7.17.26016): starting 06:41:29 (220052): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x636a02c3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7d0e9d642520] /lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7d0e9d6a53fe] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x636a02c5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x636a02c7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7d0e9d642520] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7d0e9d6e57f8] /lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7d0e9d6ea677] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7d0e9d71bf2f] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x636a02c51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x636a02c1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7d0e9d629d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7d0e9d629e40] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x636a02c1aa3a] Exiting... 08:52:14 (2916): wrapper (7.17.26016): starting 08:52:14 (2916): wrapper (7.17.26016): starting 08:52:14 (2916): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 15:36:13 (8481): wrapper (7.17.26016): starting 15:36:13 (8481): wrapper (7.17.26016): starting 15:36:13 (8481): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 16:42:50 (9282): wrapper (7.17.26016): starting 16:42:51 (9282): wrapper (7.17.26016): starting 16:42:51 (9282): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:40:36 (10989): wrapper (7.17.26016): starting 19:40:36 (10989): wrapper (7.17.26016): starting 19:40:36 (10989): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 11:03:35 (20855): wrapper (7.17.26016): starting 11:03:35 (20855): wrapper (7.17.26016): starting 11:03:35 (20855): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 11:08:08 (20923): wrapper (7.17.26016): starting 11:08:08 (20923): wrapper (7.17.26016): starting 11:08:08 (20923): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 11:42:52 (21267): wrapper (7.17.26016): starting 11:42:52 (21267): wrapper (7.17.26016): starting 11:42:52 (21267): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 11:45:18 (21312): wrapper (7.17.26016): starting 11:45:18 (21312): wrapper (7.17.26016): starting 11:45:18 (21312): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 12:50:22 (21945): wrapper (7.17.26016): starting 12:50:22 (21945): wrapper (7.17.26016): starting 12:50:22 (21945): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 13:35:48 (22397): wrapper (7.17.26016): starting 13:35:48 (22397): wrapper (7.17.26016): starting 13:35:48 (22397): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 14:01:49 (22670): wrapper (7.17.26016): starting 14:01:49 (22670): wrapper (7.17.26016): starting 14:01:49 (22670): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 14:06:30 (22746): wrapper (7.17.26016): starting 14:06:30 (22746): wrapper (7.17.26016): starting 14:06:30 (22746): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 15:16:41 (23453): wrapper (7.17.26016): starting 15:16:41 (23453): wrapper (7.17.26016): starting 15:16:41 (23453): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 15:35:05 (23671): wrapper (7.17.26016): starting 15:35:05 (23671): wrapper (7.17.26016): starting 15:35:05 (23671): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 15:53:51 (23873): wrapper (7.17.26016): starting 15:53:51 (23873): wrapper (7.17.26016): starting 15:53:51 (23873): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 16:12:14 (24078): wrapper (7.17.26016): starting 16:12:14 (24078): wrapper (7.17.26016): starting 16:12:14 (24078): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 16:31:38 (24291): wrapper (7.17.26016): starting 16:31:38 (24291): wrapper (7.17.26016): starting 16:31:38 (24291): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 16:53:03 (24526): wrapper (7.17.26016): starting 16:53:03 (24526): wrapper (7.17.26016): starting 16:53:03 (24526): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 17:11:49 (24725): wrapper (7.17.26016): starting 17:11:50 (24725): wrapper (7.17.26016): starting 17:11:50 (24725): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 17:56:41 (25193): wrapper (7.17.26016): starting 17:56:41 (25193): wrapper (7.17.26016): starting 17:56:41 (25193): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:16:21 (25989): wrapper (7.17.26016): starting 19:16:21 (25989): wrapper (7.17.26016): starting 19:16:21 (25989): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:18:05 (26052): wrapper (7.17.26016): starting 19:18:06 (26052): wrapper (7.17.26016): starting 19:18:06 (26052): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:19:29 (26084): wrapper (7.17.26016): starting 19:19:29 (26084): wrapper (7.17.26016): starting 19:19:29 (26084): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:24:03 (26159): wrapper (7.17.26016): starting 19:24:03 (26159): wrapper (7.17.26016): starting 19:24:03 (26159): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:26:23 (26199): wrapper (7.17.26016): starting 19:26:23 (26199): wrapper (7.17.26016): starting 19:26:23 (26199): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:35:38 (26343): wrapper (7.17.26016): starting 19:35:38 (26343): wrapper (7.17.26016): starting 19:35:38 (26343): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:40:21 (26420): wrapper (7.17.26016): starting 19:40:22 (26420): wrapper (7.17.26016): starting 19:40:22 (26420): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:44:58 (26486): wrapper (7.17.26016): starting 19:44:58 (26486): wrapper (7.17.26016): starting 19:44:58 (26486): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:49:36 (26559): wrapper (7.17.26016): starting 19:49:36 (26559): wrapper (7.17.26016): starting 19:49:36 (26559): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:56:43 (26688): wrapper (7.17.26016): starting 19:56:44 (26688): wrapper (7.17.26016): starting 19:56:44 (26688): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 20:04:22 (26787): wrapper (7.17.26016): starting 20:04:22 (26787): wrapper (7.17.26016): starting 20:04:22 (26787): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 20:11:02 (26882): wrapper (7.17.26016): starting 20:11:02 (26882): wrapper (7.17.26016): starting 20:11:02 (26882): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 20:13:33 (26932): wrapper (7.17.26016): starting 20:13:33 (26932): wrapper (7.17.26016): starting 20:13:33 (26932): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 20:19:08 (27020): wrapper (7.17.26016): starting 20:19:08 (27020): wrapper (7.17.26016): starting 20:19:08 (27020): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 20:23:29 (27088): wrapper (7.17.26016): starting 20:23:29 (27088): wrapper (7.17.26016): starting 20:23:29 (27088): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 20:26:48 (27148): wrapper (7.17.26016): starting 20:26:48 (27148): wrapper (7.17.26016): starting 20:26:48 (27148): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 20:29:29 (27202): wrapper (7.17.26016): starting 20:29:29 (27202): wrapper (7.17.26016): starting 20:29:29 (27202): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 20:32:34 (27301): wrapper (7.17.26016): starting 20:32:34 (27301): wrapper (7.17.26016): starting 20:32:34 (27301): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 20:36:06 (27366): wrapper (7.17.26016): starting 20:36:07 (27366): wrapper (7.17.26016): starting 20:36:07 (27366): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 20:41:41 (27443): wrapper (7.17.26016): starting 20:41:41 (27443): wrapper (7.17.26016): starting 20:41:41 (27443): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:27:00 (27896): wrapper (7.17.26016): starting 21:27:00 (27896): wrapper (7.17.26016): starting 21:27:00 (27896): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:30:31 (27967): wrapper (7.17.26016): starting 21:30:31 (27967): wrapper (7.17.26016): starting 21:30:31 (27967): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:40:03 (28085): wrapper (7.17.26016): starting 21:40:03 (28085): wrapper (7.17.26016): starting 21:40:03 (28085): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:42:25 (28134): wrapper (7.17.26016): starting 21:42:25 (28134): wrapper (7.17.26016): starting 21:42:25 (28134): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 22:11:06 (28440): wrapper (7.17.26016): starting 22:11:07 (28440): wrapper (7.17.26016): starting 22:11:07 (28440): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 22:14:27 (28498): wrapper (7.17.26016): starting 22:14:27 (28498): wrapper (7.17.26016): starting 22:14:27 (28498): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 22:46:22 (28836): wrapper (7.17.26016): starting 22:46:23 (28836): wrapper (7.17.26016): starting 22:46:23 (28836): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 23:38:38 (29355): wrapper (7.17.26016): starting 23:38:38 (29355): wrapper (7.17.26016): starting 23:38:38 (29355): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 03:09:11 (31352): wrapper (7.17.26016): starting 03:09:11 (31352): wrapper (7.17.26016): starting 03:09:11 (31352): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 15:53:23 (31352): cmdock exited; CPU time 132235.458157 15:53:23 (31352): called boinc_finish(0) </stderr_txt> ]]>
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