Task 83017729

Name	corona_RdRp_v2_sidock_01940605_r2_s-20_2
Workunit	54076873
Created	12 Sep 2024, 22:11:06 UTC
Sent	13 Sep 2024, 16:31:00 UTC
Report deadline	21 Sep 2024, 16:31:00 UTC
Received	21 Sep 2024, 8:22:12 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	50430
Run time	1 days 10 hours 46 min 17 sec
CPU time	1 days 10 hours 42 min 33 sec
Validate state	Valid
Credit	1,229.48
Device peak FLOPS	7.05 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.34 MB
Peak swap size	200.48 MB
Peak disk usage	20.45 MB
Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
22:59:46 (2802840): wrapper (7.17.26016): starting
22:59:46 (2802840): wrapper (7.17.26016): starting
22:59:46 (2802840): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5f2eaa23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x78b4cc642520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x78b4cc6a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5f2eaa25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5f2eaa27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x78b4cc642520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x78b4cc6e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x78b4cc6ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x78b4cc71bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5f2eaa251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5f2eaa21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x78b4cc629d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x78b4cc629e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5f2eaa21aa3a]

Exiting...
00:00:07 (2806255): wrapper (7.17.26016): starting
00:00:07 (2806255): wrapper (7.17.26016): starting
00:00:07 (2806255): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x65080723ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f0704042520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7f07040a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x65080725c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x65080727b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f0704042520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f07040e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f07040ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f070411bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x650807251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x65080721e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f0704029d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f0704029e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x65080721aa3a]

Exiting...
08:00:04 (2869080): wrapper (7.17.26016): starting
08:00:04 (2869080): wrapper (7.17.26016): starting
08:00:04 (2869080): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61931363ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x769b8f642520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x769b8f6a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61931365c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61931367b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x769b8f642520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x769b8f6e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x769b8f6ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x769b8f71bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x619313651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61931361e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x769b8f629d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x769b8f629e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61931361aa3a]

Exiting...
16:00:08 (2896496): wrapper (7.17.26016): starting
16:00:08 (2896496): wrapper (7.17.26016): starting
16:00:08 (2896496): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x59c9e563ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x743887442520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7438874a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x59c9e565c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x59c9e567b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x743887442520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7438874e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7438874ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x74388751bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x59c9e5651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x59c9e561e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x743887429d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x743887429e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x59c9e561aa3a]

Exiting...
00:00:05 (2924267): wrapper (7.17.26016): starting
00:00:06 (2924267): wrapper (7.17.26016): starting
00:00:06 (2924267): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6507c8e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7ee8dc042520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7ee8dc0a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6507c8e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6507c8e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7ee8dc042520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7ee8dc0e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7ee8dc0ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7ee8dc11bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6507c8e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6507c8e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7ee8dc029d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7ee8dc029e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6507c8e1aa3a]

Exiting...
08:00:06 (2951501): wrapper (7.17.26016): starting
08:00:06 (2951501): wrapper (7.17.26016): starting
08:00:06 (2951501): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:21:58 (2951501): cmdock exited; CPU time 8179.507693
10:21:58 (2951501): called boinc_finish(0)

</stderr_txt>
]]>