Task 82847517

Name	corona_RdRp_v2_sidock_01962465_r1_s-20_0
Workunit	54140592
Created	9 Sep 2024, 5:44:44 UTC
Sent	10 Sep 2024, 4:13:39 UTC
Report deadline	18 Sep 2024, 4:13:39 UTC
Received	13 Sep 2024, 1:06:36 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	5 hours 37 min 17 sec
CPU time	5 hours 36 min 55 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.21 MB
Peak swap size	200.77 MB
Peak disk usage	21.53 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
04:12:30 (118083): wrapper (7.17.26016): starting
04:12:31 (118083): wrapper (7.17.26016): starting
04:12:31 (118083): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5623ed03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7570bf445320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7570bf49eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7570bf44526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7570bf4288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7570bf4297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7570bf4a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7570bf4ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7570bf4add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5623ed05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5623ed07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7570bf445320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7570bf4ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7570bf4f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7570bf52972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5623ed051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5623ed01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7570bf42a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7570bf42a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5623ed01aa3a]

Exiting...
21:48:15 (225765): wrapper (7.17.26016): starting
21:48:15 (225765): wrapper (7.17.26016): starting
21:48:15 (225765): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x626ad3e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x78f057245320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x78f05729eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x78f05724526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x78f0572288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x78f0572297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x78f0572a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x78f0572ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x78f0572add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x626ad3e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x626ad3e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x78f057245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x78f0572ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x78f0572f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x78f05732972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x626ad3e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x626ad3e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x78f05722a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x78f05722a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x626ad3e1aa3a]

Exiting...
09:24:48 (1899): wrapper (7.17.26016): starting
09:24:48 (1899): wrapper (7.17.26016): starting
09:24:48 (1899): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56ed4b83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x730265645320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x73026569eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x73026564526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7302656288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7302656297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7302656a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7302656ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7302656add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56ed4b85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56ed4b87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x730265645320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7302656ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7302656f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x73026572972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56ed4b851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56ed4b81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x73026562a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x73026562a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56ed4b81aa3a]

Exiting...
09:51:24 (1900): wrapper (7.17.26016): starting
09:51:24 (1900): wrapper (7.17.26016): starting
09:51:24 (1900): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x621f3703ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7901dee45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7901dee9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7901dee4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7901dee288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7901dee297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7901deea8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7901deeab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7901deeadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x621f3705c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x621f3707b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7901dee45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7901deeecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7901deef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7901def2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x621f37051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x621f3701e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7901dee2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7901dee2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x621f3701aa3a]

Exiting...
20:06:03 (65749): wrapper (7.17.26016): starting
20:06:03 (65749): wrapper (7.17.26016): starting
20:06:03 (65749): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:06 (65749): cmdock exited; CPU time 2.178461
20:06:06 (65749): called boinc_finish(0)

</stderr_txt>
]]>