Task 82847490

Name	corona_RdRp_v2_sidock_01962453_r1_s-20_0
Workunit	54140568
Created	9 Sep 2024, 5:44:43 UTC
Sent	10 Sep 2024, 4:11:33 UTC
Report deadline	18 Sep 2024, 4:11:33 UTC
Received	13 Sep 2024, 1:06:36 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	6 hours 4 min 34 sec
CPU time	6 hours 4 min 14 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	202.98 MB
Peak swap size	210.81 MB
Peak disk usage	21.02 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
04:12:21 (118065): wrapper (7.17.26016): starting
04:12:21 (118065): wrapper (7.17.26016): starting
04:12:21 (118065): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5ed4dae3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x75ad48c45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x75ad48c9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x75ad48c4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x75ad48c288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x75ad48c297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x75ad48ca8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x75ad48cab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x75ad48cadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5ed4dae5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5ed4dae7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x75ad48c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x75ad48cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x75ad48cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x75ad48d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5ed4dae51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5ed4dae1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x75ad48c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x75ad48c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5ed4dae1aa3a]

Exiting...
21:48:15 (225764): wrapper (7.17.26016): starting
21:48:15 (225764): wrapper (7.17.26016): starting
21:48:15 (225764): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5789a423ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7eaaa0245320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7eaaa029eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7eaaa024526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7eaaa02288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7eaaa02297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7eaaa02a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7eaaa02ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7eaaa02add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5789a425c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5789a427b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7eaaa0245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7eaaa02ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7eaaa02f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7eaaa032972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5789a4251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5789a421e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7eaaa022a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7eaaa022a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5789a421aa3a]

Exiting...
09:24:48 (1898): wrapper (7.17.26016): starting
09:24:48 (1898): wrapper (7.17.26016): starting
09:24:48 (1898): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x579a2903ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x76282a845320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x76282a89eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x76282a84526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x76282a8288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x76282a8297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x76282a8a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x76282a8ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x76282a8add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x579a2905c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x579a2907b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x76282a845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x76282a8ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x76282a8f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x76282a92972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x579a29051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x579a2901e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x76282a82a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x76282a82a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x579a2901aa3a]

Exiting...
09:51:24 (1899): wrapper (7.17.26016): starting
09:51:24 (1899): wrapper (7.17.26016): starting
09:51:24 (1899): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5d14fb03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x74b493c45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x74b493c9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x74b493c4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x74b493c288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x74b493c297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x74b493ca8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x74b493cab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x74b493cadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5d14fb05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5d14fb07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x74b493c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x74b493cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x74b493cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x74b493d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5d14fb051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5d14fb01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x74b493c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x74b493c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5d14fb01aa3a]

Exiting...
20:06:03 (65748): wrapper (7.17.26016): starting
20:06:03 (65748): wrapper (7.17.26016): starting
20:06:03 (65748): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:06 (65748): cmdock exited; CPU time 2.262088
20:06:06 (65748): called boinc_finish(0)

</stderr_txt>
]]>