Task 82846723

Name	corona_RdRp_v2_sidock_01962072_r1_s-20_0
Workunit	54139806
Created	9 Sep 2024, 5:44:00 UTC
Sent	10 Sep 2024, 1:09:13 UTC
Report deadline	18 Sep 2024, 1:09:13 UTC
Received	13 Sep 2024, 1:06:36 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	13 hours 24 min 47 sec
CPU time	13 hours 24 min 33 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	192.74 MB
Peak swap size	200.46 MB
Peak disk usage	20.19 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
06:12:00 (137802): wrapper (7.17.26016): starting
06:12:00 (137802): wrapper (7.17.26016): starting
06:12:00 (137802): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x64b90323ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x707e3de45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x707e3deadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x64b90325c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x64b90327b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x707e3de45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x707e3deecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x707e3def9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x707e3df2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x64b903251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x64b90321e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x707e3de2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x707e3de2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x64b90321aa3a]

Exiting...
20:15:21 (68822): wrapper (7.17.26016): starting
20:15:21 (68822): wrapper (7.17.26016): starting
20:15:21 (68822): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x623ce103ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x79c995845320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x79c99589eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x79c99584526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x79c9958288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x79c9958297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x79c9958a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x79c9958ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x79c9958add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x623ce105c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x623ce107b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x79c995845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x79c9958ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x79c9958f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x79c99592972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x623ce1051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x623ce101e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x79c99582a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x79c99582a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x623ce101aa3a]

Exiting...
20:56:04 (220562): wrapper (7.17.26016): starting
20:56:04 (220562): wrapper (7.17.26016): starting
20:56:04 (220562): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61a336c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x72304da45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x72304daadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61a336c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61a336c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x72304da45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x72304daecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x72304daf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72304db2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x61a336c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61a336c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72304da2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72304da2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61a336c1aa3a]

Exiting...
09:24:48 (1896): wrapper (7.17.26016): starting
09:24:48 (1896): wrapper (7.17.26016): starting
09:24:48 (1896): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5cb3ee83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7fa714245320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7fa71429eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7fa71424526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7fa7142288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7fa7142297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7fa7142a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7fa7142ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7fa7142add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5cb3ee85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5cb3ee87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7fa714245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7fa7142ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fa7142f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7fa71432972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5cb3ee851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5cb3ee81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7fa71422a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7fa71422a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5cb3ee81aa3a]

Exiting...
09:51:24 (1897): wrapper (7.17.26016): starting
09:51:24 (1897): wrapper (7.17.26016): starting
09:51:24 (1897): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x64892983ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x74e130245320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x74e13029eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x74e13024526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x74e1302288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x74e1302297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x74e1302a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x74e1302ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x74e1302add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x64892985c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x64892987b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x74e130245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x74e1302ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x74e1302f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x74e13032972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x648929851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x64892981e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x74e13022a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x74e13022a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x64892981aa3a]

Exiting...
20:06:03 (65746): wrapper (7.17.26016): starting
20:06:03 (65746): wrapper (7.17.26016): starting
20:06:03 (65746): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:06 (65746): cmdock exited; CPU time 1.901724
20:06:06 (65746): called boinc_finish(0)

</stderr_txt>
]]>