Task 82846663

Name corona_RdRp_v2_sidock_01962043_r1_s-20_0
Workunit 54139748
Created 9 Sep 2024, 5:43:57 UTC
Sent 10 Sep 2024, 1:07:01 UTC
Report deadline 18 Sep 2024, 1:07:01 UTC
Received 15 Sep 2024, 8:59:29 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 54584
Run time 21 hours 25 min 22 sec
CPU time 21 hours 24 min 51 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 9.72 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 192.95 MB
Peak swap size 200.34 MB
Peak disk usage 20.70 MB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
02:10:12 (107320): wrapper (7.17.26016): starting
02:10:12 (107320): wrapper (7.17.26016): starting
02:10:12 (107320): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x64f763e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70e409c45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x70e409c9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x70e409c4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x70e409c288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x70e409c297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x70e409ca8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x70e409cab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x70e409cadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x64f763e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x64f763e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70e409c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x70e409cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x70e409cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x70e409d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x64f763e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x64f763e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x70e409c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x70e409c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x64f763e1aa3a]

Exiting...
22:08:42 (234472): wrapper (7.17.26016): starting
22:08:43 (234472): wrapper (7.17.26016): starting
22:08:43 (234472): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x64095903ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d4078045320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7d407809eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7d407804526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7d40780288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7d40780297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7d40780a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7d40780ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7d40780add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x64095905c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x64095907b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d4078045320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d40780ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d40780f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7d407812972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x640959051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x64095901e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d407802a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d407802a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x64095901aa3a]

Exiting...
03:46:15 (127823): wrapper (7.17.26016): starting
03:46:15 (127823): wrapper (7.17.26016): starting
03:46:15 (127823): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5711c2c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7eb2a6c45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7eb2a6c9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7eb2a6c4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7eb2a6c288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7eb2a6c297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7eb2a6ca8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7eb2a6cab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7eb2a6cadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5711c2c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5711c2c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7eb2a6c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7eb2a6cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7eb2a6cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7eb2a6d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5711c2c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5711c2c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7eb2a6c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7eb2a6c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5711c2c1aa3a]

Exiting...
20:01:04 (229135): wrapper (7.17.26016): starting
20:01:04 (229135): wrapper (7.17.26016): starting
20:01:04 (229135): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62ca3383ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70ea62245320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x70ea622add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62ca3385c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62ca3387b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70ea62245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x70ea622ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x70ea622f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x70ea6232972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62ca33851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62ca3381e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x70ea6222a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x70ea6222a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62ca3381aa3a]

Exiting...
20:01:02 (381645): wrapper (7.17.26016): starting
20:01:03 (381645): wrapper (7.17.26016): starting
20:01:03 (381645): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5fdd4983ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e8e70c45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7e8e70c9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7e8e70c4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7e8e70c288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7e8e70c297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7e8e70ca8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7e8e70cab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7e8e70cadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5fdd4985c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5fdd4987b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e8e70c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7e8e70cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7e8e70cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7e8e70d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5fdd49851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5fdd4981e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7e8e70c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7e8e70c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5fdd4981aa3a]

Exiting...
02:25:22 (425033): wrapper (7.17.26016): starting
02:25:22 (425033): wrapper (7.17.26016): starting
02:25:22 (425033): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x60cc10a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x77e75e445320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x77e75e49eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x77e75e44526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x77e75e4288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x77e75e4297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x77e75e4a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x77e75e4ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x77e75e4add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x60cc10a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x60cc10a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x77e75e445320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x77e75e4ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x77e75e4f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x77e75e52972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x60cc10a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x60cc10a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x77e75e42a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x77e75e42a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x60cc10a1aa3a]

Exiting...
03:42:54 (2595): wrapper (7.17.26016): starting
03:42:54 (2595): wrapper (7.17.26016): starting
03:42:54 (2595): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5c06e2a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x71bfe1045320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x71bfe109eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x71bfe104526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x71bfe10288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x71bfe10297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x71bfe10a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x71bfe10ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x71bfe10add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5c06e2a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5c06e2a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x71bfe1045320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x71bfe10ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x71bfe10f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x71bfe112972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5c06e2a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5c06e2a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x71bfe102a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x71bfe102a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5c06e2a1aa3a]

Exiting...
03:59:01 (6972): wrapper (7.17.26016): starting
03:59:01 (6972): wrapper (7.17.26016): starting
03:59:01 (6972): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:59:03 (6972): cmdock exited; CPU time 1.551188
03:59:03 (6972): called boinc_finish(0)

</stderr_txt>
]]>


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