Task 82842284

Name corona_RdRp_v2_sidock_01951253_r1_s-20_1
Workunit 54098168
Created 9 Sep 2024, 1:06:37 UTC
Sent 9 Sep 2024, 8:06:33 UTC
Report deadline 17 Sep 2024, 8:06:33 UTC
Received 17 Sep 2024, 18:54:40 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 50430
Run time 2 days 5 hours 53 min 30 sec
CPU time 2 days 5 hours 49 min 50 sec
Validate state Valid
Credit 1,847.61
Device peak FLOPS 7.05 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.07 MB
Peak swap size 200.33 MB
Peak disk usage 21.10 MB

Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
13:57:04 (2435687): wrapper (7.17.26016): starting
13:57:04 (2435687): wrapper (7.17.26016): starting
13:57:04 (2435687): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x630cd7a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7dedc2442520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7dedc24a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x630cd7a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x630cd7a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7dedc2442520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7dedc24e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7dedc24ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7dedc251bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x630cd7a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x630cd7a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7dedc2429d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7dedc2429e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x630cd7a1aa3a]

Exiting...
16:00:03 (2442391): wrapper (7.17.26016): starting
16:00:04 (2442391): wrapper (7.17.26016): starting
16:00:04 (2442391): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x582d8c23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x77eae3e42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x77eae3ea53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x582d8c25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x582d8c27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x77eae3e42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x77eae3ee57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x77eae3eea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x77eae3f1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x582d8c251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x582d8c21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x77eae3e29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x77eae3e29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x582d8c21aa3a]

Exiting...
00:00:07 (2470270): wrapper (7.17.26016): starting
00:00:07 (2470270): wrapper (7.17.26016): starting
00:00:07 (2470270): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x63075d03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x767138242520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7671382a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x63075d05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x63075d07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x767138242520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7671382e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7671382ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x76713831bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x63075d051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x63075d01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x767138229d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x767138229e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x63075d01aa3a]

Exiting...
08:00:03 (2497694): wrapper (7.17.26016): starting
08:00:03 (2497694): wrapper (7.17.26016): starting
08:00:03 (2497694): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x651e5763ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x760e38a42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x760e38aa53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x651e5765c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x651e5767b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x760e38a42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x760e38ae57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x760e38aea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x760e38b1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x651e57651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x651e5761e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x760e38a29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x760e38a29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x651e5761aa3a]

Exiting...
16:00:35 (2524779): wrapper (7.17.26016): starting
16:00:35 (2524779): wrapper (7.17.26016): starting
16:00:35 (2524779): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5d975be3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x745261a42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x745261aa53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5d975be5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5d975be7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x745261a42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x745261ae57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x745261aea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x745261b1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5d975be51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5d975be1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x745261a29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x745261a29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5d975be1aa3a]

Exiting...
00:00:05 (2552522): wrapper (7.17.26016): starting
00:00:05 (2552522): wrapper (7.17.26016): starting
00:00:05 (2552522): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x578bb8c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x70c767e42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x70c767ea53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x578bb8c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x578bb8c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x70c767e42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x70c767ee57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x70c767eea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x70c767f1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x578bb8c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x578bb8c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x70c767e29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x70c767e29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x578bb8c1aa3a]

Exiting...
08:00:04 (2583621): wrapper (7.17.26016): starting
08:00:04 (2583621): wrapper (7.17.26016): starting
08:00:04 (2583621): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5a59d623ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x748261642520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7482616a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5a59d625c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5a59d627b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x748261642520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7482616e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7482616ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x74826171bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5a59d6251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5a59d621e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x748261629d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x748261629e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5a59d621aa3a]

Exiting...
16:00:03 (2611317): wrapper (7.17.26016): starting
16:00:03 (2611317): wrapper (7.17.26016): starting
16:00:03 (2611317): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:54:27 (2611317): cmdock exited; CPU time 17656.140272
20:54:27 (2611317): called boinc_finish(0)

</stderr_txt>
]]>


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