Name | corona_RdRp_v2_sidock_01932805_r2_s-20_1 |
Workunit | 54061273 |
Created | 8 Sep 2024, 17:01:04 UTC |
Sent | 9 Sep 2024, 6:17:22 UTC |
Report deadline | 17 Sep 2024, 6:17:22 UTC |
Received | 15 Sep 2024, 8:59:29 UTC |
Server state | Over |
Outcome | Validate error |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 54584 |
Run time | 1 days 3 hours 13 min 41 sec |
CPU time | 1 days 3 hours 13 min 11 sec |
Validate state | Invalid |
Credit | 0.00 |
Device peak FLOPS | 9.72 GFLOPS |
Application version | CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu |
Peak working set size | 191.84 MB |
Peak swap size | 199.73 MB |
Peak disk usage | 21.42 MB |
<core_client_version>8.0.4</core_client_version> <![CDATA[ <stderr_txt> 22:29:23 (873694): wrapper (7.17.26016): starting 22:29:23 (873694): wrapper (7.17.26016): starting 22:29:23 (873694): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x65425403ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b7219645320] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7b72196add45] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x65425405c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x65425407b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b7219645320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7b72196ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7b72196f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7b721972972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x654254051adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x65425401e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7b721962a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7b721962a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x65425401aa3a] Exiting... 01:06:38 (100927): wrapper (7.17.26016): starting 01:06:38 (100927): wrapper (7.17.26016): starting 01:06:38 (100927): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x57dac023ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d09e2c45320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7d09e2c9eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7d09e2c4526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7d09e2c288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7d09e2c297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7d09e2ca8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7d09e2cab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7d09e2cadd9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x57dac025c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x57dac027b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d09e2c45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d09e2cecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d09e2cf9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7d09e2d2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x57dac0251adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x57dac021e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d09e2c2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d09e2c2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x57dac021aa3a] Exiting... 21:49:45 (232530): wrapper (7.17.26016): starting 21:49:45 (232530): wrapper (7.17.26016): starting 21:49:45 (232530): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x59557c43ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e958f445320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7e958f49eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7e958f44526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7e958f4288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7e958f4297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7e958f4a8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7e958f4ab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7e958f4add9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x59557c45c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x59557c47b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e958f445320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7e958f4ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7e958f4f9a27] /lib/x86_64-linux-gnu/libc.so.6(sleep+0x43)[0x7e958f50ec63] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x59557c451a9a] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x59557c41e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7e958f42a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7e958f42a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x59557c41aa3a] Exiting... 03:15:56 (124779): wrapper (7.17.26016): starting 03:15:56 (124779): wrapper (7.17.26016): starting 03:15:56 (124779): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x64402f43ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7fbcd8245320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7fbcd829eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7fbcd824526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7fbcd82288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7fbcd82297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7fbcd82a8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7fbcd82ab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7fbcd82add9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x64402f45c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x64402f47b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7fbcd8245320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7fbcd82ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fbcd82f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7fbcd832972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x64402f451adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x64402f41e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7fbcd822a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7fbcd822a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x64402f41aa3a] Exiting... 20:01:04 (229131): wrapper (7.17.26016): starting 20:01:04 (229131): wrapper (7.17.26016): starting 20:01:04 (229131): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x640225c3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73e437845320] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x73e4378add45] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x640225c5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x640225c7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73e437845320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x73e4378ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x73e4378f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x73e43792972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x640225c51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x640225c1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x73e43782a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x73e43782a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x640225c1aa3a] Exiting... 20:01:02 (381641): wrapper (7.17.26016): starting 20:01:03 (381641): wrapper (7.17.26016): starting 20:01:03 (381641): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x601e1d43ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x74c0e5e45320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x74c0e5e9eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x74c0e5e4526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x74c0e5e288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x74c0e5e297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x74c0e5ea8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x74c0e5eab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x74c0e5eadd9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x601e1d45c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x601e1d47b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x74c0e5e45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x74c0e5eecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x74c0e5ef9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x74c0e5f2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x601e1d451adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x601e1d41e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x74c0e5e2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x74c0e5e2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x601e1d41aa3a] Exiting... 02:22:35 (424388): wrapper (7.17.26016): starting 02:22:35 (424388): wrapper (7.17.26016): starting 02:22:35 (424388): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58bd1163ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x79eae9e45320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x79eae9e9eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x79eae9e4526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x79eae9e288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x79eae9e297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x79eae9ea8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x79eae9eab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x79eae9eadd9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58bd1165c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58bd1167b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x79eae9e45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x79eae9eecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x79eae9ef9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x79eae9f2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x58bd11651adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58bd1161e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x79eae9e2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x79eae9e2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58bd1161aa3a] Exiting... 03:42:54 (2592): wrapper (7.17.26016): starting 03:42:54 (2592): wrapper (7.17.26016): starting 03:42:54 (2592): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61155da3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x77c1b0845320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x77c1b089eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x77c1b084526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x77c1b08288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x77c1b08297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x77c1b08a8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x77c1b08ab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x77c1b08add9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61155da5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61155da7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x77c1b0845320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x77c1b08ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x77c1b08f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x77c1b092972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x61155da51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61155da1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x77c1b082a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x77c1b082a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61155da1aa3a] Exiting... 03:59:01 (6969): wrapper (7.17.26016): starting 03:59:01 (6969): wrapper (7.17.26016): starting 03:59:01 (6969): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 03:59:03 (6969): cmdock exited; CPU time 1.735358 03:59:03 (6969): called boinc_finish(0) </stderr_txt> ]]>
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