Task 82841736

Name corona_RdRp_v2_sidock_01932805_r2_s-20_1
Workunit 54061273
Created 8 Sep 2024, 17:01:04 UTC
Sent 9 Sep 2024, 6:17:22 UTC
Report deadline 17 Sep 2024, 6:17:22 UTC
Received 15 Sep 2024, 8:59:29 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 54584
Run time 1 days 3 hours 13 min 41 sec
CPU time 1 days 3 hours 13 min 11 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 9.72 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 191.84 MB
Peak swap size 199.73 MB
Peak disk usage 21.42 MB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
22:29:23 (873694): wrapper (7.17.26016): starting
22:29:23 (873694): wrapper (7.17.26016): starting
22:29:23 (873694): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x65425403ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b7219645320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7b72196add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x65425405c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x65425407b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b7219645320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7b72196ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7b72196f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7b721972972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x654254051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x65425401e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7b721962a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7b721962a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x65425401aa3a]

Exiting...
01:06:38 (100927): wrapper (7.17.26016): starting
01:06:38 (100927): wrapper (7.17.26016): starting
01:06:38 (100927): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x57dac023ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d09e2c45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7d09e2c9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7d09e2c4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7d09e2c288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7d09e2c297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7d09e2ca8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7d09e2cab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7d09e2cadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x57dac025c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x57dac027b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d09e2c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d09e2cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d09e2cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7d09e2d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x57dac0251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x57dac021e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d09e2c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d09e2c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x57dac021aa3a]

Exiting...
21:49:45 (232530): wrapper (7.17.26016): starting
21:49:45 (232530): wrapper (7.17.26016): starting
21:49:45 (232530): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x59557c43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e958f445320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7e958f49eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7e958f44526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7e958f4288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7e958f4297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7e958f4a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7e958f4ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7e958f4add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x59557c45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x59557c47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e958f445320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7e958f4ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7e958f4f9a27]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x43)[0x7e958f50ec63]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x59557c451a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x59557c41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7e958f42a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7e958f42a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x59557c41aa3a]

Exiting...
03:15:56 (124779): wrapper (7.17.26016): starting
03:15:56 (124779): wrapper (7.17.26016): starting
03:15:56 (124779): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x64402f43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7fbcd8245320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7fbcd829eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7fbcd824526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7fbcd82288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7fbcd82297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7fbcd82a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7fbcd82ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7fbcd82add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x64402f45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x64402f47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7fbcd8245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7fbcd82ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fbcd82f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7fbcd832972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x64402f451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x64402f41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7fbcd822a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7fbcd822a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x64402f41aa3a]

Exiting...
20:01:04 (229131): wrapper (7.17.26016): starting
20:01:04 (229131): wrapper (7.17.26016): starting
20:01:04 (229131): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x640225c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73e437845320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x73e4378add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x640225c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x640225c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73e437845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x73e4378ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x73e4378f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x73e43792972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x640225c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x640225c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x73e43782a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x73e43782a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x640225c1aa3a]

Exiting...
20:01:02 (381641): wrapper (7.17.26016): starting
20:01:03 (381641): wrapper (7.17.26016): starting
20:01:03 (381641): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x601e1d43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x74c0e5e45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x74c0e5e9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x74c0e5e4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x74c0e5e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x74c0e5e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x74c0e5ea8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x74c0e5eab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x74c0e5eadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x601e1d45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x601e1d47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x74c0e5e45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x74c0e5eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x74c0e5ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x74c0e5f2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x601e1d451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x601e1d41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x74c0e5e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x74c0e5e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x601e1d41aa3a]

Exiting...
02:22:35 (424388): wrapper (7.17.26016): starting
02:22:35 (424388): wrapper (7.17.26016): starting
02:22:35 (424388): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58bd1163ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x79eae9e45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x79eae9e9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x79eae9e4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x79eae9e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x79eae9e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x79eae9ea8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x79eae9eab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x79eae9eadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58bd1165c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58bd1167b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x79eae9e45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x79eae9eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x79eae9ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x79eae9f2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x58bd11651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58bd1161e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x79eae9e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x79eae9e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58bd1161aa3a]

Exiting...
03:42:54 (2592): wrapper (7.17.26016): starting
03:42:54 (2592): wrapper (7.17.26016): starting
03:42:54 (2592): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61155da3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x77c1b0845320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x77c1b089eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x77c1b084526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x77c1b08288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x77c1b08297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x77c1b08a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x77c1b08ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x77c1b08add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61155da5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61155da7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x77c1b0845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x77c1b08ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x77c1b08f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x77c1b092972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x61155da51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61155da1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x77c1b082a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x77c1b082a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61155da1aa3a]

Exiting...
03:59:01 (6969): wrapper (7.17.26016): starting
03:59:01 (6969): wrapper (7.17.26016): starting
03:59:01 (6969): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:59:03 (6969): cmdock exited; CPU time 1.735358
03:59:03 (6969): called boinc_finish(0)

</stderr_txt>
]]>


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