Task 82841679

Name corona_RdRp_v2_sidock_01958344_r1_s-20_1
Workunit 54112350
Created 8 Sep 2024, 16:18:19 UTC
Sent 9 Sep 2024, 6:25:29 UTC
Report deadline 17 Sep 2024, 6:25:29 UTC
Received 15 Sep 2024, 8:59:29 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 54584
Run time 1 days 0 hours 30 min 20 sec
CPU time 1 days 0 hours 29 min 54 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 9.72 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 192.63 MB
Peak swap size 201.23 MB
Peak disk usage 20.96 MB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
01:10:43 (101332): wrapper (7.17.26016): starting
01:10:43 (101332): wrapper (7.17.26016): starting
01:10:43 (101332): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61ba5383ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70b056c45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x70b056cadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61ba5385c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61ba5387b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70b056c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x70b056cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x70b056cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x70b056d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x61ba53851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61ba5381e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x70b056c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x70b056c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61ba5381aa3a]

Exiting...
22:08:38 (234459): wrapper (7.17.26016): starting
22:08:38 (234459): wrapper (7.17.26016): starting
22:08:38 (234459): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62723f63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7afffa445320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7afffa49eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7afffa44526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7afffa4288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7afffa4297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7afffa4a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7afffa4ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7afffa4add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62723f65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62723f67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7afffa445320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7afffa4ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7afffa4f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7afffa52972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62723f651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62723f61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7afffa42a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7afffa42a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62723f61aa3a]

Exiting...
03:43:59 (127586): wrapper (7.17.26016): starting
03:43:59 (127586): wrapper (7.17.26016): starting
03:43:59 (127586): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x64cf9303ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x778d17a45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x778d17a9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x778d17a4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x778d17a288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x778d17a297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x778d17aa8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x778d17aab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x778d17aadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x64cf9305c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x64cf9307b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x778d17a45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x778d17aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x778d17af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x778d17b2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x64cf93051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x64cf9301e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x778d17a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x778d17a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x64cf9301aa3a]

Exiting...
20:01:04 (229133): wrapper (7.17.26016): starting
20:01:04 (229133): wrapper (7.17.26016): starting
20:01:04 (229133): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5a9631c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x737b4a645320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x737b4a69eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x737b4a64526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x737b4a6288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x737b4a6297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x737b4a6a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x737b4a6ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x737b4a6add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5a9631c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5a9631c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x737b4a645320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x737b4a6ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x737b4a6f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x737b4a72972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5a9631c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5a9631c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x737b4a62a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x737b4a62a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5a9631c1aa3a]

Exiting...
20:01:02 (381643): wrapper (7.17.26016): starting
20:01:03 (381643): wrapper (7.17.26016): starting
20:01:03 (381643): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5a5afa03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x72be30045320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x72be300add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5a5afa05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5a5afa07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x72be30045320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x72be300ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x72be300f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72be3012972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5a5afa051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5a5afa01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72be3002a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72be3002a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5a5afa01aa3a]

Exiting...
02:22:35 (424389): wrapper (7.17.26016): starting
02:22:35 (424389): wrapper (7.17.26016): starting
02:22:35 (424389): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x602578c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x779e7de45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x779e7de9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x779e7de4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x779e7de288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x779e7de297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x779e7dea8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x779e7deab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x779e7deadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x602578c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x602578c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x779e7de45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x779e7deecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x779e7def9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x779e7df2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x602578c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x602578c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x779e7de2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x779e7de2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x602578c1aa3a]

Exiting...
03:42:54 (2593): wrapper (7.17.26016): starting
03:42:54 (2593): wrapper (7.17.26016): starting
03:42:54 (2593): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x609eab23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7422e1445320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7422e149eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7422e144526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7422e14288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7422e14297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7422e14a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7422e14ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7422e14add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x609eab25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x609eab27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7422e1445320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7422e14ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7422e14f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7422e152972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x609eab251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x609eab21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7422e142a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7422e142a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x609eab21aa3a]

Exiting...
03:59:01 (6970): wrapper (7.17.26016): starting
03:59:01 (6970): wrapper (7.17.26016): starting
03:59:01 (6970): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:59:03 (6970): cmdock exited; CPU time 1.783276
03:59:03 (6970): called boinc_finish(0)

</stderr_txt>
]]>


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