Name | corona_RdRp_v2_sidock_01958344_r1_s-20_1 |
Workunit | 54112350 |
Created | 8 Sep 2024, 16:18:19 UTC |
Sent | 9 Sep 2024, 6:25:29 UTC |
Report deadline | 17 Sep 2024, 6:25:29 UTC |
Received | 15 Sep 2024, 8:59:29 UTC |
Server state | Over |
Outcome | Validate error |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 54584 |
Run time | 1 days 0 hours 30 min 20 sec |
CPU time | 1 days 0 hours 29 min 54 sec |
Validate state | Invalid |
Credit | 0.00 |
Device peak FLOPS | 9.72 GFLOPS |
Application version | CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu |
Peak working set size | 192.63 MB |
Peak swap size | 201.23 MB |
Peak disk usage | 20.96 MB |
<core_client_version>8.0.4</core_client_version> <![CDATA[ <stderr_txt> 01:10:43 (101332): wrapper (7.17.26016): starting 01:10:43 (101332): wrapper (7.17.26016): starting 01:10:43 (101332): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61ba5383ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70b056c45320] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x70b056cadd45] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61ba5385c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61ba5387b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70b056c45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x70b056cecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x70b056cf9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x70b056d2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x61ba53851adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61ba5381e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x70b056c2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x70b056c2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61ba5381aa3a] Exiting... 22:08:38 (234459): wrapper (7.17.26016): starting 22:08:38 (234459): wrapper (7.17.26016): starting 22:08:38 (234459): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62723f63ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7afffa445320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7afffa49eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7afffa44526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7afffa4288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7afffa4297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7afffa4a8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7afffa4ab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7afffa4add9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62723f65c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62723f67b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7afffa445320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7afffa4ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7afffa4f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7afffa52972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62723f651adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62723f61e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7afffa42a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7afffa42a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62723f61aa3a] Exiting... 03:43:59 (127586): wrapper (7.17.26016): starting 03:43:59 (127586): wrapper (7.17.26016): starting 03:43:59 (127586): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x64cf9303ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x778d17a45320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x778d17a9eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x778d17a4526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x778d17a288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x778d17a297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x778d17aa8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x778d17aab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x778d17aadd9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x64cf9305c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x64cf9307b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x778d17a45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x778d17aecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x778d17af9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x778d17b2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x64cf93051adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x64cf9301e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x778d17a2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x778d17a2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x64cf9301aa3a] Exiting... 20:01:04 (229133): wrapper (7.17.26016): starting 20:01:04 (229133): wrapper (7.17.26016): starting 20:01:04 (229133): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5a9631c3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x737b4a645320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x737b4a69eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x737b4a64526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x737b4a6288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x737b4a6297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x737b4a6a8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x737b4a6ab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x737b4a6add9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5a9631c5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5a9631c7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x737b4a645320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x737b4a6ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x737b4a6f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x737b4a72972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5a9631c51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5a9631c1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x737b4a62a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x737b4a62a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5a9631c1aa3a] Exiting... 20:01:02 (381643): wrapper (7.17.26016): starting 20:01:03 (381643): wrapper (7.17.26016): starting 20:01:03 (381643): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5a5afa03ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x72be30045320] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x72be300add45] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5a5afa05c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5a5afa07b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x72be30045320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x72be300ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x72be300f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72be3012972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5a5afa051adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5a5afa01e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72be3002a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72be3002a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5a5afa01aa3a] Exiting... 02:22:35 (424389): wrapper (7.17.26016): starting 02:22:35 (424389): wrapper (7.17.26016): starting 02:22:35 (424389): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x602578c3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x779e7de45320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x779e7de9eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x779e7de4526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x779e7de288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x779e7de297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x779e7dea8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x779e7deab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x779e7deadd9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x602578c5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x602578c7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x779e7de45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x779e7deecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x779e7def9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x779e7df2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x602578c51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x602578c1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x779e7de2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x779e7de2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x602578c1aa3a] Exiting... 03:42:54 (2593): wrapper (7.17.26016): starting 03:42:54 (2593): wrapper (7.17.26016): starting 03:42:54 (2593): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x609eab23ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7422e1445320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7422e149eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7422e144526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7422e14288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7422e14297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7422e14a8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7422e14ab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7422e14add9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x609eab25c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x609eab27b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7422e1445320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7422e14ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7422e14f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7422e152972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x609eab251adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x609eab21e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7422e142a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7422e142a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x609eab21aa3a] Exiting... 03:59:01 (6970): wrapper (7.17.26016): starting 03:59:01 (6970): wrapper (7.17.26016): starting 03:59:01 (6970): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 03:59:03 (6970): cmdock exited; CPU time 1.783276 03:59:03 (6970): called boinc_finish(0) </stderr_txt> ]]>
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