Task 82819892

Name	corona_RdRp_v2_sidock_01928207_r1_s-20_1
Workunit	54052076
Created	7 Sep 2024, 9:57:33 UTC
Sent	9 Sep 2024, 1:07:13 UTC
Report deadline	17 Sep 2024, 1:07:13 UTC
Received	13 Sep 2024, 1:06:36 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	19 hours 54 min 30 sec
CPU time	19 hours 54 min 3 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.02 MB
Peak swap size	200.50 MB
Peak disk usage	20.82 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
23:46:09 (93925): wrapper (7.17.26016): starting
23:46:09 (93925): wrapper (7.17.26016): starting
23:46:09 (93925): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x64d70ca3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x75f3de645320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x75f3de69eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x75f3de64526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x75f3de6288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x75f3de6297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x75f3de6a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x75f3de6ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x75f3de6add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x64d70ca5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x64d70ca7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x75f3de645320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x75f3de6ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x75f3de6f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x75f3de72972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x64d70ca51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x64d70ca1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x75f3de62a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x75f3de62a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x64d70ca1aa3a]

Exiting...
04:47:16 (128272): wrapper (7.17.26016): starting
04:47:16 (128272): wrapper (7.17.26016): starting
04:47:16 (128272): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5c6276c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x721728c45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x721728c9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x721728c4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x721728c288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x721728c297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x721728ca8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x721728cab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x721728cadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5c6276c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5c6276c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x721728c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x721728cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x721728cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x721728d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5c6276c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5c6276c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x721728c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x721728c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5c6276c1aa3a]

Exiting...
20:06:14 (67523): wrapper (7.17.26016): starting
20:06:14 (67523): wrapper (7.17.26016): starting
20:06:14 (67523): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6517ba03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x781edde45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x781eddeadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6517ba05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6517ba07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x781edde45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x781eddeecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x781eddef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x781eddf2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6517ba051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6517ba01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x781edde2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x781edde2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6517ba01aa3a]

Exiting...
20:38:23 (218372): wrapper (7.17.26016): starting
20:38:23 (218372): wrapper (7.17.26016): starting
20:38:23 (218372): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61ad5ac3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d910c245320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7d910c29eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7d910c24526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7d910c2288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7d910c2297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7d910c2a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7d910c2ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7d910c2add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61ad5ac5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61ad5ac7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d910c245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d910c2ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d910c2f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7d910c32972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x61ad5ac51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61ad5ac1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d910c22a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d910c22a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61ad5ac1aa3a]

Exiting...
09:24:48 (1894): wrapper (7.17.26016): starting
09:24:48 (1894): wrapper (7.17.26016): starting
09:24:48 (1894): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ba65a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e0c45845320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7e0c4589eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7e0c4584526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7e0c458288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7e0c458297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7e0c458a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7e0c458ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7e0c458add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ba65a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ba65a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e0c45845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7e0c458ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7e0c458f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7e0c4592972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ba65a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ba65a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7e0c4582a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7e0c4582a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ba65a1aa3a]

Exiting...
09:51:24 (1895): wrapper (7.17.26016): starting
09:51:24 (1895): wrapper (7.17.26016): starting
09:51:24 (1895): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56e00fc3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d9293645320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7d929369eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7d929364526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7d92936288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7d92936297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7d92936a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7d92936ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7d92936add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56e00fc5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56e00fc7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d9293645320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d92936ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d92936f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7d929372972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56e00fc51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56e00fc1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d929362a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d929362a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56e00fc1aa3a]

Exiting...
20:06:03 (65744): wrapper (7.17.26016): starting
20:06:03 (65744): wrapper (7.17.26016): starting
20:06:03 (65744): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:06 (65744): cmdock exited; CPU time 2.192504
20:06:06 (65744): called boinc_finish(0)

</stderr_txt>
]]>