Task 82810292

Name	corona_RdRp_v2_sidock_01957018_r2_s-20_0
Workunit	54109699
Created	3 Sep 2024, 12:19:10 UTC
Sent	8 Sep 2024, 2:40:21 UTC
Report deadline	16 Sep 2024, 2:40:21 UTC
Received	11 Sep 2024, 1:06:33 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	14 hours 55 min 52 sec
CPU time	14 hours 55 min 23 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.59 MB
Peak swap size	201.04 MB
Peak disk usage	20.54 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
23:14:57 (99383): wrapper (7.17.26016): starting
23:14:57 (99383): wrapper (7.17.26016): starting
23:14:57 (99383): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5ddf0023ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x76f4ad045320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x76f4ad0add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5ddf0025c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5ddf0027b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x76f4ad045320]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x5ddf0023aec0]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x76f4ad045320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x76f4ad0ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x76f4ad0f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x76f4ad12972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5ddf00251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5ddf0021e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x76f4ad02a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x76f4ad02a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5ddf0021aa3a]

Exiting...
20:52:07 (75888): wrapper (7.17.26016): starting
20:52:07 (75888): wrapper (7.17.26016): starting
20:52:07 (75888): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6553e423ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e90fe445320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7e90fe49eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7e90fe44526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7e90fe4288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7e90fe4297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7e90fe4a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7e90fe4ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7e90fe4add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6553e425c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6553e427b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e90fe445320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7e90fe4ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7e90fe4f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7e90fe52972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6553e4251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6553e421e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7e90fe42a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7e90fe42a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6553e421aa3a]

Exiting...
21:06:30 (80557): wrapper (7.17.26016): starting
21:06:30 (80557): wrapper (7.17.26016): starting
21:06:30 (80557): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x63f2a1a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x764d50245320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x764d5029eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x764d5024526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x764d502288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x764d502297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x764d502a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x764d502ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x764d502add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x63f2a1a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x63f2a1a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x764d50245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x764d502ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x764d502f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x764d5032972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x63f2a1a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x63f2a1a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x764d5022a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x764d5022a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x63f2a1a1aa3a]

Exiting...
09:48:54 (1879): wrapper (7.17.26016): starting
09:48:54 (1879): wrapper (7.17.26016): starting
09:48:54 (1879): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5d86c9e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x76b620445320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x76b62049eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x76b62044526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x76b6204288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x76b6204297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x76b6204a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x76b6204ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x76b6204add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5d86c9e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5d86c9e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x76b620445320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x76b6204ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x76b6204f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x76b62052972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5d86c9e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5d86c9e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x76b62042a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x76b62042a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5d86c9e1aa3a]

Exiting...
20:06:03 (67433): wrapper (7.17.26016): starting
20:06:03 (67433): wrapper (7.17.26016): starting
20:06:03 (67433): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:06 (67433): cmdock exited; CPU time 2.208530
20:06:06 (67433): called boinc_finish(0)

</stderr_txt>
]]>