Name | corona_RdRp_v2_sidock_01955883_r2_s-20_0 |
Workunit | 54107429 |
Created | 3 Sep 2024, 12:16:40 UTC |
Sent | 7 Sep 2024, 17:50:32 UTC |
Report deadline | 15 Sep 2024, 17:50:32 UTC |
Received | 10 Sep 2024, 1:06:26 UTC |
Server state | Over |
Outcome | Validate error |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 60274 |
Run time | 14 hours 20 min 28 sec |
CPU time | 14 hours 19 min 49 sec |
Validate state | Invalid |
Credit | 0.00 |
Device peak FLOPS | 1.00 GFLOPS |
Application version | CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu |
Peak working set size | 193.59 MB |
Peak swap size | 201.04 MB |
Peak disk usage | 20.68 MB |
<core_client_version>8.0.4</core_client_version> <![CDATA[ <stderr_txt> 13:03:02 (35620): wrapper (7.17.26016): starting 13:03:02 (35620): wrapper (7.17.26016): starting 13:03:02 (35620): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58a5ab03ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d5027e45320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7d5027e9eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7d5027e4526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7d5027e288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7d5027e297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7d5027ea8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7d5027eab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7d5027eadd9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58a5ab05c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58a5ab07b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d5027e45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d5027eecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d5027ef9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7d5027f2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x58a5ab051adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58a5ab01e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d5027e2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d5027e2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58a5ab01aa3a] Exiting... 23:07:30 (98648): wrapper (7.17.26016): starting 23:07:30 (98648): wrapper (7.17.26016): starting 23:07:30 (98648): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5bd9c603ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x74f8bca45320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x74f8bca9eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x74f8bca4526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x74f8bca288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x74f8bca297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x74f8bcaa8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x74f8bcaab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x74f8bcaadd9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5bd9c605c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5bd9c607b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x74f8bca45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x74f8bcaecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x74f8bcaf9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x74f8bcb2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5bd9c6051adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5bd9c601e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x74f8bca2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x74f8bca2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5bd9c601aa3a] Exiting... 20:06:10 (71124): wrapper (7.17.26016): starting 20:06:10 (71124): wrapper (7.17.26016): starting 20:06:10 (71124): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5f2c2d83ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x725338245320] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7253382add45] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5f2c2d85c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5f2c2d87b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x725338245320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7253382ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7253382f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72533832972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5f2c2d851adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5f2c2d81e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72533822a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72533822a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5f2c2d81aa3a] Exiting... 08:21:31 (1887): wrapper (7.17.26016): starting 08:21:31 (1887): wrapper (7.17.26016): starting 08:21:31 (1887): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x584dc9e3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70a337845320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x70a33789eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x70a33784526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x70a3378288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x70a3378297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x70a3378a8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x70a3378ab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x70a3378add9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x584dc9e5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x584dc9e7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70a337845320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x70a3378ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x70a3378f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x70a33792972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x584dc9e51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x584dc9e1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x70a33782a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x70a33782a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x584dc9e1aa3a] Exiting... 20:06:02 (74575): wrapper (7.17.26016): starting 20:06:02 (74575): wrapper (7.17.26016): starting 20:06:02 (74575): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 20:06:04 (74575): cmdock exited; CPU time 1.880439 20:06:04 (74575): called boinc_finish(0) </stderr_txt> ]]>
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