Task 82807970

Name	corona_RdRp_v2_sidock_01955870_r2_s-20_0
Workunit	54107403
Created	3 Sep 2024, 12:16:33 UTC
Sent	7 Sep 2024, 17:34:51 UTC
Report deadline	15 Sep 2024, 17:34:51 UTC
Received	10 Sep 2024, 1:06:26 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	17 hours 8 min 10 sec
CPU time	17 hours 7 min 25 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.78 MB
Peak swap size	201.49 MB
Peak disk usage	20.60 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
13:01:08 (35436): wrapper (7.17.26016): starting
13:01:08 (35436): wrapper (7.17.26016): starting
13:01:08 (35436): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/18/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5ea23fc3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x72a234645320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x72a23469eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x72a23464526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x72a2346288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x72a2346297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x72a2346a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x72a2346ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x72a2346add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5ea23fc5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5ea23fc7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x72a234645320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x72a2346ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x72a2346f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72a23472972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5ea23fc51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5ea23fc1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72a23462a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72a23462a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5ea23fc1aa3a]

Exiting...
23:05:26 (98446): wrapper (7.17.26016): starting
23:05:26 (98446): wrapper (7.17.26016): starting
23:05:26 (98446): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/18/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x556a67c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7c6c2f245320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7c6c2f29eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7c6c2f24526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7c6c2f2288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7c6c2f2297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7c6c2f2a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7c6c2f2ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7c6c2f2add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x556a67c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x556a67c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7c6c2f245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7c6c2f2ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7c6c2f2f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7c6c2f32972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x556a67c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x556a67c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7c6c2f22a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7c6c2f22a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x556a67c1aa3a]

Exiting...
20:06:09 (71112): wrapper (7.17.26016): starting
20:06:09 (71112): wrapper (7.17.26016): starting
20:06:09 (71112): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/18/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x59a5ea23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b4809c45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7b4809cadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x59a5ea25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x59a5ea27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b4809c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7b4809cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7b4809cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7b4809d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x59a5ea251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x59a5ea21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7b4809c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7b4809c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x59a5ea21aa3a]

Exiting...
08:21:31 (1886): wrapper (7.17.26016): starting
08:21:31 (1886): wrapper (7.17.26016): starting
08:21:31 (1886): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/18/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5f825903ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b5eec645320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7b5eec69eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7b5eec64526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7b5eec6288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7b5eec6297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7b5eec6a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7b5eec6ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7b5eec6add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5f825905c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5f825907b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b5eec645320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7b5eec6ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7b5eec6f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7b5eec72972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5f8259051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5f825901e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7b5eec62a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7b5eec62a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5f825901aa3a]

Exiting...
20:06:02 (74574): wrapper (7.17.26016): starting
20:06:02 (74574): wrapper (7.17.26016): starting
20:06:02 (74574): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/18/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:05 (74574): cmdock exited; CPU time 1.909425
20:06:05 (74574): called boinc_finish(0)

</stderr_txt>
]]>