Task 82806799

Name	corona_RdRp_v2_sidock_01955275_r1_s-20_0
Workunit	54106212
Created	3 Sep 2024, 12:15:15 UTC
Sent	7 Sep 2024, 13:47:38 UTC
Report deadline	15 Sep 2024, 13:47:38 UTC
Received	10 Sep 2024, 1:06:26 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	19 hours 53 min 38 sec
CPU time	19 hours 52 min 33 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	192.64 MB
Peak swap size	200.41 MB
Peak disk usage	20.43 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
10:58:23 (23084): wrapper (7.17.26016): starting
10:58:23 (23084): wrapper (7.17.26016): starting
10:58:23 (23084): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6506bfe3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b5ec0045320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7b5ec009eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7b5ec004526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7b5ec00288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7b5ec00297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7b5ec00a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7b5ec00ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7b5ec00add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6506bfe5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6506bfe7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b5ec0045320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7b5ec00ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7b5ec00f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7b5ec012972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6506bfe51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6506bfe1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7b5ec002a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7b5ec002a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6506bfe1aa3a]

Exiting...
23:02:22 (98145): wrapper (7.17.26016): starting
23:02:22 (98145): wrapper (7.17.26016): starting
23:02:22 (98145): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x60fadc63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x720311845320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x72031189eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x72031184526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7203118288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7203118297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7203118a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7203118ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7203118add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x60fadc65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x60fadc67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x720311845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7203118ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7203118f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72031192972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x60fadc651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x60fadc61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72031182a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72031182a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x60fadc61aa3a]

Exiting...
20:06:08 (71108): wrapper (7.17.26016): starting
20:06:08 (71108): wrapper (7.17.26016): starting
20:06:08 (71108): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x64287f43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7862fda45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7862fda9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7862fda4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7862fda288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7862fda297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7862fdaa8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7862fdaab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7862fdaadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x64287f45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x64287f47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7862fda45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7862fdaecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7862fdaf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7862fdb2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x64287f451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x64287f41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7862fda2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7862fda2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x64287f41aa3a]

Exiting...
08:21:31 (1885): wrapper (7.17.26016): starting
08:21:31 (1885): wrapper (7.17.26016): starting
08:21:31 (1885): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x63782543ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d0f33045320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7d0f3309eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7d0f3304526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7d0f330288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7d0f330297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7d0f330a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7d0f330ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7d0f330add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x63782545c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x63782547b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7d0f33045320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d0f330ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d0f330f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7d0f3312972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x637825451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x63782541e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d0f3302a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d0f3302a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x63782541aa3a]

Exiting...
20:06:02 (74573): wrapper (7.17.26016): starting
20:06:02 (74573): wrapper (7.17.26016): starting
20:06:02 (74573): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:05 (74573): cmdock exited; CPU time 1.929018
20:06:05 (74573): called boinc_finish(0)

</stderr_txt>
]]>