Task 82803095

Name	corona_RdRp_v2_sidock_01953419_r2_s-20_0
Workunit	54102501
Created	3 Sep 2024, 12:10:57 UTC
Sent	6 Sep 2024, 23:43:43 UTC
Report deadline	14 Sep 2024, 23:43:43 UTC
Received	9 Sep 2024, 1:06:29 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	16 hours 47 min 4 sec
CPU time	16 hours 45 min 46 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	192.15 MB
Peak swap size	200.16 MB
Peak disk usage	20.55 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
22:25:03 (80778): wrapper (7.17.26016): starting
22:25:03 (80778): wrapper (7.17.26016): starting
22:25:03 (80778): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5afc3703ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x727579445320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x72757949eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x72757944526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7275794288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7275794297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7275794a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7275794ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7275794add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5afc3705c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5afc3707b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x727579445320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7275794ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7275794f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72757952972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5afc37051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5afc3701e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72757942a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72757942a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5afc3701aa3a]

Exiting...
07:54:39 (1878): wrapper (7.17.26016): starting
07:54:39 (1878): wrapper (7.17.26016): starting
07:54:39 (1878): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5addb883ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73e070a45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x73e070a9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x73e070a4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x73e070a288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x73e070a297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x73e070aa8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x73e070aab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x73e070aadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5addb885c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5addb887b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73e070a45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x73e070aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x73e070af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x73e070b2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5addb8851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5addb881e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x73e070a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x73e070a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5addb881aa3a]

Exiting...
20:06:02 (79702): wrapper (7.17.26016): starting
20:06:02 (79702): wrapper (7.17.26016): starting
20:06:02 (79702): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5aa40603ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7bea86845320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7bea8689eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7bea8684526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7bea868288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7bea868297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7bea868a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7bea868ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7bea868add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5aa40605c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5aa40607b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7bea86845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7bea868ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7bea868f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7bea8692972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5aa406051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5aa40601e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7bea8682a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7bea8682a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5aa40601aa3a]

Exiting...
09:04:03 (1865): wrapper (7.17.26016): starting
09:04:03 (1865): wrapper (7.17.26016): starting
09:04:03 (1865): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5ea1ce43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x775872645320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x77587269eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x77587264526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7758726288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7758726297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7758726a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7758726ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7758726add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5ea1ce45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5ea1ce47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x775872645320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7758726ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7758726f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x77587272972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5ea1ce451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5ea1ce41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x77587262a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x77587262a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5ea1ce41aa3a]

Exiting...
20:06:03 (71043): wrapper (7.17.26016): starting
20:06:03 (71043): wrapper (7.17.26016): starting
20:06:03 (71043): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:05 (71043): cmdock exited; CPU time 1.873467
20:06:05 (71043): called boinc_finish(0)

</stderr_txt>
]]>