Task 82802995

Name	corona_RdRp_v2_sidock_01953369_r2_s-20_0
Workunit	54102401
Created	3 Sep 2024, 12:10:50 UTC
Sent	6 Sep 2024, 23:19:08 UTC
Report deadline	14 Sep 2024, 23:19:08 UTC
Received	9 Sep 2024, 1:06:29 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	17 hours 15 min 29 sec
CPU time	17 hours 14 min 11 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	192.26 MB
Peak swap size	199.86 MB
Peak disk usage	20.42 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
21:56:44 (77936): wrapper (7.17.26016): starting
21:56:44 (77936): wrapper (7.17.26016): starting
21:56:44 (77936): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x647bb2a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x75d1d4045320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x75d1d40add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x647bb2a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x647bb2a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x75d1d4045320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x75d1d40ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x75d1d40f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x75d1d412972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x647bb2a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x647bb2a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x75d1d402a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x75d1d402a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x647bb2a1aa3a]

Exiting...
07:54:39 (1877): wrapper (7.17.26016): starting
07:54:39 (1877): wrapper (7.17.26016): starting
07:54:39 (1877): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b0a3aa3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7498d2c45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7498d2cadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b0a3aa5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b0a3aa7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7498d2c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7498d2cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7498d2cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7498d2d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b0a3aa51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b0a3aa1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7498d2c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7498d2c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b0a3aa1aa3a]

Exiting...
20:06:02 (79701): wrapper (7.17.26016): starting
20:06:02 (79701): wrapper (7.17.26016): starting
20:06:02 (79701): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b146103ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f7bf0245320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f7bf029eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f7bf024526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f7bf02288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7f7bf02297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7f7bf02a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7f7bf02ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7f7bf02add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b146105c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b146107b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f7bf0245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7f7bf02ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f7bf02f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7f7bf032972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b1461051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b146101e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f7bf022a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f7bf022a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b146101aa3a]

Exiting...
09:04:03 (1864): wrapper (7.17.26016): starting
09:04:03 (1864): wrapper (7.17.26016): starting
09:04:03 (1864): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62c1ea63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x78783ee45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x78783ee9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x78783ee4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x78783ee288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x78783ee297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x78783eea8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x78783eeab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x78783eeadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62c1ea65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62c1ea67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x78783ee45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x78783eeecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x78783eef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x78783ef2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62c1ea651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62c1ea61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x78783ee2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x78783ee2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62c1ea61aa3a]

Exiting...
20:06:03 (71042): wrapper (7.17.26016): starting
20:06:03 (71042): wrapper (7.17.26016): starting
20:06:03 (71042): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:05 (71042): cmdock exited; CPU time 1.892085
20:06:05 (71042): called boinc_finish(0)

</stderr_txt>
]]>