Task 82798733

Name	corona_RdRp_v2_sidock_01951253_r1_s-20_0
Workunit	54098168
Created	3 Sep 2024, 12:05:56 UTC
Sent	6 Sep 2024, 9:45:48 UTC
Report deadline	14 Sep 2024, 9:45:48 UTC
Received	9 Sep 2024, 1:06:29 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	1 days 4 hours 45 min 42 sec
CPU time	1 days 4 hours 44 min 6 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	192.46 MB
Peak swap size	200.17 MB
Peak disk usage	20.92 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
12:51:53 (20993): wrapper (7.17.26016): starting
12:51:53 (20993): wrapper (7.17.26016): starting
12:51:53 (20993): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5d325d23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e459b445320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7e459b4add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5d325d25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5d325d27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e459b445320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7e459b4ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7e459b4f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7e459b52972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5d325d251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5d325d21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7e459b42a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7e459b42a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5d325d21aa3a]

Exiting...
07:54:39 (1873): wrapper (7.17.26016): starting
07:54:39 (1873): wrapper (7.17.26016): starting
07:54:39 (1873): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x63768503ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f0c7fa45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f0c7fa9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f0c7fa4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f0c7fa288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7f0c7fa297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7f0c7faa8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7f0c7faab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7f0c7faadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x63768505c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x63768507b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f0c7fa45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7f0c7faecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f0c7faf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7f0c7fb2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x637685051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x63768501e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f0c7fa2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f0c7fa2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x63768501aa3a]

Exiting...
20:06:02 (79698): wrapper (7.17.26016): starting
20:06:02 (79698): wrapper (7.17.26016): starting
20:06:02 (79698): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5d82c143ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x75ee6e045320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x75ee6e09eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x75ee6e04526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x75ee6e0288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x75ee6e0297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x75ee6e0a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x75ee6e0ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x75ee6e0add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5d82c145c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5d82c147b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x75ee6e045320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x75ee6e0ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x75ee6e0f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x75ee6e12972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5d82c1451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5d82c141e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x75ee6e02a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x75ee6e02a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5d82c141aa3a]

Exiting...
09:04:03 (1863): wrapper (7.17.26016): starting
09:04:03 (1863): wrapper (7.17.26016): starting
09:04:03 (1863): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x57e1fae3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7ae964245320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7ae96429eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7ae96424526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7ae9642288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7ae9642297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7ae9642a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7ae9642ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7ae9642add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x57e1fae5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x57e1fae7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7ae964245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7ae9642ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7ae9642f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7ae96432972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x57e1fae51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x57e1fae1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7ae96422a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7ae96422a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x57e1fae1aa3a]

Exiting...
20:06:03 (71041): wrapper (7.17.26016): starting
20:06:03 (71041): wrapper (7.17.26016): starting
20:06:03 (71041): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:05 (71041): cmdock exited; CPU time 1.892444
20:06:05 (71041): called boinc_finish(0)

</stderr_txt>
]]>