Task 82798684

Name	corona_RdRp_v2_sidock_01951222_r2_s-20_0
Workunit	54098107
Created	3 Sep 2024, 12:05:48 UTC
Sent	6 Sep 2024, 9:40:12 UTC
Report deadline	14 Sep 2024, 9:40:12 UTC
Received	9 Sep 2024, 1:06:29 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	1 days 6 hours 38 min 8 sec
CPU time	1 days 6 hours 36 min 32 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	191.89 MB
Peak swap size	200.14 MB
Peak disk usage	20.85 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
12:50:42 (20878): wrapper (7.17.26016): starting
12:50:42 (20878): wrapper (7.17.26016): starting
12:50:42 (20878): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/16/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5f8bddc3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x792a6f445320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x792a6f49eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x792a6f44526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x792a6f4288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x792a6f4297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x792a6f4a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x792a6f4ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x792a6f4add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5f8bddc5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5f8bddc7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x792a6f445320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x792a6f4ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x792a6f4f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x792a6f52972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5f8bddc51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5f8bddc1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x792a6f42a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x792a6f42a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5f8bddc1aa3a]

Exiting...
07:54:39 (1872): wrapper (7.17.26016): starting
07:54:39 (1872): wrapper (7.17.26016): starting
07:54:39 (1872): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/16/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62152203ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x789bb1a45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x789bb1aadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62152205c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62152207b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x789bb1a45320]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x62152203aec0]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x789bb1a45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x789bb1aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x789bb1af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x789bb1b2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x621522051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62152201e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x789bb1a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x789bb1a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62152201aa3a]

Exiting...
20:06:02 (79697): wrapper (7.17.26016): starting
20:06:02 (79697): wrapper (7.17.26016): starting
20:06:02 (79697): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/16/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6123ae03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x71a853c45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x71a853c9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x71a853c4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x71a853c288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x71a853c297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x71a853ca8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x71a853cab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x71a853cadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6123ae05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6123ae07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x71a853c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x71a853cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x71a853cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x71a853d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6123ae051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6123ae01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x71a853c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x71a853c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6123ae01aa3a]

Exiting...
09:04:03 (1862): wrapper (7.17.26016): starting
09:04:03 (1862): wrapper (7.17.26016): starting
09:04:03 (1862): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/16/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5f41fc63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b9144e45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7b9144e9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7b9144e4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7b9144e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7b9144e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7b9144ea8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7b9144eab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7b9144eadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5f41fc65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5f41fc67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b9144e45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7b9144eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7b9144ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7b9144f2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5f41fc651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5f41fc61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7b9144e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7b9144e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5f41fc61aa3a]

Exiting...
20:06:03 (71040): wrapper (7.17.26016): starting
20:06:03 (71040): wrapper (7.17.26016): starting
20:06:03 (71040): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/16/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:05 (71040): cmdock exited; CPU time 1.890416
20:06:05 (71040): called boinc_finish(0)

</stderr_txt>
]]>