Task 82765738

Name	corona_RdRp_v2_sidock_01938888_r1_s-20_0
Workunit	54073438
Created	29 Aug 2024, 4:59:15 UTC
Sent	2 Sep 2024, 14:10:28 UTC
Report deadline	10 Sep 2024, 14:10:28 UTC
Received	5 Sep 2024, 1:06:27 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	15 hours 25 min 31 sec
CPU time	15 hours 24 min 27 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.39 MB
Peak swap size	200.76 MB
Peak disk usage	20.51 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
09:25:15 (24871): wrapper (7.17.26016): starting
09:25:15 (24871): wrapper (7.17.26016): starting
09:25:15 (24871): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x57b1cf23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x79066e845320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x79066e8add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x57b1cf25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x57b1cf27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x79066e845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x79066e8ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x79066e8f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x79066e92972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x57b1cf251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x57b1cf21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x79066e82a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x79066e82a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x57b1cf21aa3a]

Exiting...
20:06:03 (90137): wrapper (7.17.26016): starting
20:06:03 (90137): wrapper (7.17.26016): starting
20:06:03 (90137): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:17:53 (1924): wrapper (7.17.26016): starting
21:17:53 (1924): wrapper (7.17.26016): starting
21:17:53 (1924): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:24:44 (1928): wrapper (7.17.26016): starting
23:24:44 (1928): wrapper (7.17.26016): starting
23:24:44 (1928): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5dc87fc3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x72f31d645320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x72f31d69eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x72f31d64526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x72f31d6288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x72f31d6297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x72f31d6a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x72f31d6ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x72f31d6add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5dc87fc5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5dc87fc7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x72f31d645320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x72f31d6ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x72f31d6f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72f31d72972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5dc87fc51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5dc87fc1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72f31d62a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72f31d62a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5dc87fc1aa3a]

Exiting...
21:01:49 (135477): wrapper (7.17.26016): starting
21:01:49 (135477): wrapper (7.17.26016): starting
21:01:49 (135477): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x63b76c43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x74b324645320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x74b3246add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x63b76c45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x63b76c47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x74b324645320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x74b3246ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x74b3246f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x74b32472972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x63b76c451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x63b76c41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x74b32462a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x74b32462a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x63b76c41aa3a]

Exiting...
16:03:22 (3326): wrapper (7.17.26016): starting
16:03:22 (3326): wrapper (7.17.26016): starting
16:03:22 (3326): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5a2da303ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70e2b2c45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x70e2b2c9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x70e2b2c4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x70e2b2c288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x70e2b2c297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x70e2b2ca8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x70e2b2cab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x70e2b2cadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5a2da305c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5a2da307b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70e2b2c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x70e2b2cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x70e2b2cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x70e2b2d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5a2da3051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5a2da301e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x70e2b2c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x70e2b2c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5a2da301aa3a]

Exiting...
20:06:03 (28345): wrapper (7.17.26016): starting
20:06:03 (28345): wrapper (7.17.26016): starting
20:06:03 (28345): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:05 (28345): cmdock exited; CPU time 1.715243
20:06:05 (28345): called boinc_finish(0)

</stderr_txt>
]]>