Name | corona_RdRp_v2_sidock_01938855_r1_s-20_0 |
Workunit | 54073372 |
Created | 29 Aug 2024, 4:59:12 UTC |
Sent | 2 Sep 2024, 14:03:03 UTC |
Report deadline | 10 Sep 2024, 14:03:03 UTC |
Received | 5 Sep 2024, 1:06:27 UTC |
Server state | Over |
Outcome | Validate error |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 60274 |
Run time | 16 hours 57 min 13 sec |
CPU time | 16 hours 56 min 34 sec |
Validate state | Invalid |
Credit | 0.00 |
Device peak FLOPS | 1.00 GFLOPS |
Application version | CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu |
Peak working set size | 193.02 MB |
Peak swap size | 200.84 MB |
Peak disk usage | 20.46 MB |
<core_client_version>8.0.4</core_client_version> <![CDATA[ <stderr_txt> 09:25:01 (24843): wrapper (7.17.26016): starting 09:25:01 (24843): wrapper (7.17.26016): starting 09:25:01 (24843): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6431d423ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7227eea45320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7227eea9eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7227eea4526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7227eea288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7227eea297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7227eeaa8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7227eeaab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7227eeaadd9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6431d425c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6431d427b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7227eea45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7227eeaecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7227eeaf9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7227eeb2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6431d4251adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6431d421e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7227eea2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7227eea2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6431d421aa3a] Exiting... 20:06:03 (90136): wrapper (7.17.26016): starting 20:06:03 (90136): wrapper (7.17.26016): starting 20:06:03 (90136): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:17:53 (1923): wrapper (7.17.26016): starting 21:17:53 (1923): wrapper (7.17.26016): starting 21:17:53 (1923): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 23:24:44 (1927): wrapper (7.17.26016): starting 23:24:44 (1927): wrapper (7.17.26016): starting 23:24:44 (1927): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55bd3203ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x79b1f4e45320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x79b1f4e9eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x79b1f4e4526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x79b1f4e288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x79b1f4e297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x79b1f4ea8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x79b1f4eab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x79b1f4eadd9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55bd3205c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55bd3207b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x79b1f4e45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x79b1f4eecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x79b1f4ef9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x79b1f4f2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55bd32051adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55bd3201e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x79b1f4e2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x79b1f4e2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55bd3201aa3a] Exiting... 20:24:30 (131221): wrapper (7.17.26016): starting 20:24:30 (131221): wrapper (7.17.26016): starting 20:24:30 (131221): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x57bbf823ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7cfaabe45320] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7cfaabeadd45] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x57bbf825c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x57bbf827b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7cfaabe45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7cfaabeecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7cfaabef9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7cfaabf2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x57bbf8251adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x57bbf821e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7cfaabe2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7cfaabe2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x57bbf821aa3a] Exiting... 07:39:02 (13550): wrapper (7.17.26016): starting 07:39:02 (13550): wrapper (7.17.26016): starting 07:39:02 (13550): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x621a23e3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7bff1f045320] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7bff1f0add45] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x621a23e5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x621a23e7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7bff1f045320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7bff1f0ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7bff1f0f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7bff1f12972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x621a23e51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x621a23e1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7bff1f02a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7bff1f02a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x621a23e1aa3a] Exiting... 16:03:21 (3310): wrapper (7.17.26016): starting 16:03:21 (3310): wrapper (7.17.26016): starting 16:03:21 (3310): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b371ac3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x716ecd045320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x716ecd09eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x716ecd04526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x716ecd0288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x716ecd0297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x716ecd0a8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x716ecd0ab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x716ecd0add9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b371ac5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b371ac7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x716ecd045320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x716ecd0ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x716ecd0f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x716ecd12972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b371ac51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b371ac1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x716ecd02a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x716ecd02a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b371ac1aa3a] Exiting... 20:06:03 (28344): wrapper (7.17.26016): starting 20:06:03 (28344): wrapper (7.17.26016): starting 20:06:03 (28344): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 20:06:05 (28344): cmdock exited; CPU time 1.810224 20:06:05 (28344): called boinc_finish(0) </stderr_txt> ]]>
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