Task 82765672

Name corona_RdRp_v2_sidock_01938855_r1_s-20_0
Workunit 54073372
Created 29 Aug 2024, 4:59:12 UTC
Sent 2 Sep 2024, 14:03:03 UTC
Report deadline 10 Sep 2024, 14:03:03 UTC
Received 5 Sep 2024, 1:06:27 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 60274
Run time 16 hours 57 min 13 sec
CPU time 16 hours 56 min 34 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 1.00 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.02 MB
Peak swap size 200.84 MB
Peak disk usage 20.46 MB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
09:25:01 (24843): wrapper (7.17.26016): starting
09:25:01 (24843): wrapper (7.17.26016): starting
09:25:01 (24843): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6431d423ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7227eea45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7227eea9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7227eea4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7227eea288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7227eea297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7227eeaa8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7227eeaab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7227eeaadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6431d425c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6431d427b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7227eea45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7227eeaecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7227eeaf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7227eeb2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6431d4251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6431d421e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7227eea2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7227eea2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6431d421aa3a]

Exiting...
20:06:03 (90136): wrapper (7.17.26016): starting
20:06:03 (90136): wrapper (7.17.26016): starting
20:06:03 (90136): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:17:53 (1923): wrapper (7.17.26016): starting
21:17:53 (1923): wrapper (7.17.26016): starting
21:17:53 (1923): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:24:44 (1927): wrapper (7.17.26016): starting
23:24:44 (1927): wrapper (7.17.26016): starting
23:24:44 (1927): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55bd3203ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x79b1f4e45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x79b1f4e9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x79b1f4e4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x79b1f4e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x79b1f4e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x79b1f4ea8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x79b1f4eab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x79b1f4eadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55bd3205c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55bd3207b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x79b1f4e45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x79b1f4eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x79b1f4ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x79b1f4f2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55bd32051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55bd3201e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x79b1f4e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x79b1f4e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55bd3201aa3a]

Exiting...
20:24:30 (131221): wrapper (7.17.26016): starting
20:24:30 (131221): wrapper (7.17.26016): starting
20:24:30 (131221): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x57bbf823ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7cfaabe45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7cfaabeadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x57bbf825c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x57bbf827b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7cfaabe45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7cfaabeecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7cfaabef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7cfaabf2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x57bbf8251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x57bbf821e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7cfaabe2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7cfaabe2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x57bbf821aa3a]

Exiting...
07:39:02 (13550): wrapper (7.17.26016): starting
07:39:02 (13550): wrapper (7.17.26016): starting
07:39:02 (13550): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x621a23e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7bff1f045320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7bff1f0add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x621a23e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x621a23e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7bff1f045320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7bff1f0ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7bff1f0f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7bff1f12972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x621a23e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x621a23e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7bff1f02a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7bff1f02a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x621a23e1aa3a]

Exiting...
16:03:21 (3310): wrapper (7.17.26016): starting
16:03:21 (3310): wrapper (7.17.26016): starting
16:03:21 (3310): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b371ac3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x716ecd045320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x716ecd09eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x716ecd04526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x716ecd0288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x716ecd0297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x716ecd0a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x716ecd0ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x716ecd0add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b371ac5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b371ac7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x716ecd045320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x716ecd0ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x716ecd0f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x716ecd12972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b371ac51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b371ac1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x716ecd02a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x716ecd02a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b371ac1aa3a]

Exiting...
20:06:03 (28344): wrapper (7.17.26016): starting
20:06:03 (28344): wrapper (7.17.26016): starting
20:06:03 (28344): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:05 (28344): cmdock exited; CPU time 1.810224
20:06:05 (28344): called boinc_finish(0)

</stderr_txt>
]]>


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