Task 82765399

Name	corona_RdRp_v2_sidock_01938717_r2_s-20_0
Workunit	54073097
Created	29 Aug 2024, 4:58:54 UTC
Sent	2 Sep 2024, 12:57:10 UTC
Report deadline	10 Sep 2024, 12:57:10 UTC
Received	5 Sep 2024, 1:06:27 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	21 hours 15 min 3 sec
CPU time	21 hours 13 min 56 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.40 MB
Peak swap size	201.20 MB
Peak disk usage	20.63 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
07:57:22 (15532): wrapper (7.17.26016): starting
07:57:22 (15532): wrapper (7.17.26016): starting
07:57:22 (15532): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6409a043ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f5290c45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f5290c9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f5290c4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f5290c288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7f5290c297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7f5290ca8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7f5290cab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7f5290cadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6409a045c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6409a047b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f5290c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7f5290cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f5290cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7f5290d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6409a0451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6409a041e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f5290c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f5290c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6409a041aa3a]

Exiting...
20:06:03 (90134): wrapper (7.17.26016): starting
20:06:03 (90134): wrapper (7.17.26016): starting
20:06:03 (90134): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:17:53 (1921): wrapper (7.17.26016): starting
21:17:53 (1921): wrapper (7.17.26016): starting
21:17:53 (1921): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:24:44 (1925): wrapper (7.17.26016): starting
23:24:44 (1925): wrapper (7.17.26016): starting
23:24:44 (1925): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62356b63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7bcab1a45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7bcab1a9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7bcab1a4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7bcab1a288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7bcab1a297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7bcab1aa8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7bcab1aab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7bcab1aadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62356b65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62356b67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7bcab1a45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7bcab1aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7bcab1af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7bcab1b2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62356b651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62356b61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7bcab1a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7bcab1a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62356b61aa3a]

Exiting...
20:18:45 (130655): wrapper (7.17.26016): starting
20:18:45 (130655): wrapper (7.17.26016): starting
20:18:45 (130655): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5bffdee3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73c127c45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x73c127cadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5bffdee5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5bffdee7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73c127c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x73c127cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x73c127cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x73c127d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5bffdee51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5bffdee1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x73c127c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x73c127c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5bffdee1aa3a]

Exiting...
07:24:04 (11911): wrapper (7.17.26016): starting
07:24:04 (11911): wrapper (7.17.26016): starting
07:24:04 (11911): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5ffc7aa3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7827c9a45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7827c9a9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7827c9a4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7827c9a288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7827c9a297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7827c9aa8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7827c9aab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7827c9aadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5ffc7aa5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5ffc7aa7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7827c9a45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7827c9aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7827c9af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7827c9b2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5ffc7aa51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5ffc7aa1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7827c9a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7827c9a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5ffc7aa1aa3a]

Exiting...
16:03:20 (3285): wrapper (7.17.26016): starting
16:03:20 (3285): wrapper (7.17.26016): starting
16:03:20 (3285): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b4e6723ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x737981845320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x73798189eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x73798184526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7379818288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7379818297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7379818a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7379818ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7379818add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b4e6725c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b4e6727b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x737981845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7379818ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7379818f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x73798192972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b4e67251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b4e6721e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x73798182a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x73798182a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b4e6721aa3a]

Exiting...
20:06:03 (28343): wrapper (7.17.26016): starting
20:06:03 (28343): wrapper (7.17.26016): starting
20:06:03 (28343): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:06:05 (28343): cmdock exited; CPU time 1.860597
20:06:05 (28343): called boinc_finish(0)

</stderr_txt>
]]>