Name | corona_RdRp_v2_sidock_01938472_r2_s-20_0 |
Workunit | 54072607 |
Created | 29 Aug 2024, 4:58:25 UTC |
Sent | 2 Sep 2024, 11:16:35 UTC |
Report deadline | 10 Sep 2024, 11:16:35 UTC |
Received | 5 Sep 2024, 1:06:27 UTC |
Server state | Over |
Outcome | Validate error |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 60274 |
Run time | 23 hours 57 min 14 sec |
CPU time | 23 hours 56 min 25 sec |
Validate state | Invalid |
Credit | 0.00 |
Device peak FLOPS | 1.00 GFLOPS |
Application version | CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu |
Peak working set size | 193.43 MB |
Peak swap size | 200.89 MB |
Peak disk usage | 20.67 MB |
<core_client_version>8.0.4</core_client_version> <![CDATA[ <stderr_txt> 06:39:29 (7162): wrapper (7.17.26016): starting 06:39:29 (7162): wrapper (7.17.26016): starting 06:39:29 (7162): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/26/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b4a7783ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e346b645320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7e346b69eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7e346b64526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7e346b6288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7e346b6297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7e346b6a8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7e346b6ab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7e346b6add9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b4a7785c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b4a7787b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7e346b645320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7e346b6ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7e346b6f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7e346b72972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b4a77851adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b4a7781e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7e346b62a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7e346b62a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b4a7781aa3a] Exiting... 20:06:03 (90129): wrapper (7.17.26016): starting 20:06:03 (90129): wrapper (7.17.26016): starting 20:06:03 (90129): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/26/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:17:53 (1916): wrapper (7.17.26016): starting 21:17:53 (1916): wrapper (7.17.26016): starting 21:17:53 (1916): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/26/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 23:24:44 (1920): wrapper (7.17.26016): starting 23:24:44 (1920): wrapper (7.17.26016): starting 23:24:44 (1920): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/26/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5c11cee3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x75754ea45320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x75754ea9eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x75754ea4526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x75754ea288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x75754ea297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x75754eaa8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x75754eaab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x75754eaadd9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5c11cee5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5c11cee7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x75754ea45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x75754eaecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x75754eaf9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x75754eb2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5c11cee51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5c11cee1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x75754ea2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x75754ea2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5c11cee1aa3a] Exiting... 20:16:07 (130373): wrapper (7.17.26016): starting 20:16:07 (130373): wrapper (7.17.26016): starting 20:16:07 (130373): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/26/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x57778083ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f473a045320] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7f473a0add45] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x57778085c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x57778087b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f473a045320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7f473a0ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f473a0f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7f473a12972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x577780851adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x57778081e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f473a02a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f473a02a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x57778081aa3a] Exiting... 06:42:19 (5751): wrapper (7.17.26016): starting 06:42:19 (5751): wrapper (7.17.26016): starting 06:42:19 (5751): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/26/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x607de983ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7fdf7ac45320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7fdf7ac9eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7fdf7ac4526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7fdf7ac288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7fdf7ac297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7fdf7aca8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7fdf7acab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7fdf7acadd9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x607de985c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x607de987b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7fdf7ac45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7fdf7acecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fdf7acf9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7fdf7ad2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x607de9851adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x607de981e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7fdf7ac2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7fdf7ac2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x607de981aa3a] Exiting... 15:51:45 (1864): wrapper (7.17.26016): starting 15:51:45 (1864): wrapper (7.17.26016): starting 15:51:45 (1864): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/26/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56f8dce3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x75faf1445320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x75faf149eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x75faf144526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x75faf14288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x75faf14297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x75faf14a8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x75faf14ab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x75faf14add9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56f8dce5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56f8dce7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x75faf1445320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x75faf14ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x75faf14f9a27] /lib/x86_64-linux-gnu/libc.so.6(sleep+0x43)[0x75faf150ec63] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x56f8dce51a9a] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56f8dce1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x75faf142a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x75faf142a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56f8dce1aa3a] Exiting... 16:03:14 (2107): wrapper (7.17.26016): starting 16:03:14 (2107): wrapper (7.17.26016): starting 16:03:14 (2107): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/26/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 16:03:17 (2107): cmdock exited; CPU time 2.405789 16:03:17 (2107): called boinc_finish(0) </stderr_txt> ]]>
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