Name | corona_RdRp_v2_sidock_01938483_r1_s-20_0 |
Workunit | 54072628 |
Created | 29 Aug 2024, 4:58:24 UTC |
Sent | 2 Sep 2024, 11:16:35 UTC |
Report deadline | 10 Sep 2024, 11:16:35 UTC |
Received | 5 Sep 2024, 1:06:27 UTC |
Server state | Over |
Outcome | Validate error |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 60274 |
Run time | 23 hours 26 min 19 sec |
CPU time | 23 hours 25 min 11 sec |
Validate state | Invalid |
Credit | 0.00 |
Device peak FLOPS | 1.00 GFLOPS |
Application version | CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu |
Peak working set size | 193.20 MB |
Peak swap size | 200.83 MB |
Peak disk usage | 20.62 MB |
<core_client_version>8.0.4</core_client_version> <![CDATA[ <stderr_txt> 06:39:36 (7182): wrapper (7.17.26016): starting 06:39:36 (7182): wrapper (7.17.26016): starting 06:39:36 (7182): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61f6e4e3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7c2806e45320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7c2806e9eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7c2806e4526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7c2806e288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7c2806e297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7c2806ea8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7c2806eab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7c2806eadd9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61f6e4e5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61f6e4e7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7c2806e45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7c2806eecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7c2806ef9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7c2806f2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x61f6e4e51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61f6e4e1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7c2806e2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7c2806e2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61f6e4e1aa3a] Exiting... 20:06:03 (90131): wrapper (7.17.26016): starting 20:06:03 (90131): wrapper (7.17.26016): starting 20:06:03 (90131): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:17:53 (1918): wrapper (7.17.26016): starting 21:17:53 (1918): wrapper (7.17.26016): starting 21:17:53 (1918): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 23:24:44 (1922): wrapper (7.17.26016): starting 23:24:44 (1922): wrapper (7.17.26016): starting 23:24:44 (1922): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56db1723ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7c0a49a45320] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7c0a49aadd45] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56db1725c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56db1727b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7c0a49a45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7c0a49aecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7c0a49af9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7c0a49b2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56db17251adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56db1721e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7c0a49a2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7c0a49a2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56db1721aa3a] Exiting... 20:18:06 (130584): wrapper (7.17.26016): starting 20:18:07 (130584): wrapper (7.17.26016): starting 20:18:07 (130584): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5ebb9ce3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7177b2445320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7177b249eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7177b244526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7177b24288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7177b24297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7177b24a8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7177b24ab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7177b24add9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5ebb9ce5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5ebb9ce7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7177b2445320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7177b24ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7177b24f9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7177b252972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5ebb9ce51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5ebb9ce1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7177b242a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7177b242a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5ebb9ce1aa3a] Exiting... 06:44:05 (5928): wrapper (7.17.26016): starting 06:44:05 (5928): wrapper (7.17.26016): starting 06:44:05 (5928): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x583ec143ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7a4556a45320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7a4556a9eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7a4556a4526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7a4556a288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7a4556a297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7a4556aa8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7a4556aab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7a4556aadd9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x583ec145c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x583ec147b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7a4556a45320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7a4556aecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7a4556af9a27] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7a4556b2972c] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x583ec1451adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x583ec141e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7a4556a2a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7a4556a2a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x583ec141aa3a] Exiting... 15:51:45 (1865): wrapper (7.17.26016): starting 15:51:45 (1865): wrapper (7.17.26016): starting 15:51:45 (1865): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5ef51103ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70a688645320] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x70a68869eb1c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x70a68864526e] /lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x70a6886288ff] /lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x70a6886297b6] /lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x70a6886a8fe5] /lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x70a6886ab37c] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x70a6886add9e] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5ef51105c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5ef51107b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x70a688645320] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x70a6886ecadf] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x70a6886f9a27] /lib/x86_64-linux-gnu/libc.so.6(sleep+0x43)[0x70a68870ec63] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x5ef511051a9a] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5ef51101e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x70a68862a1ca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x70a68862a28b] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5ef51101aa3a] Exiting... 16:03:14 (2108): wrapper (7.17.26016): starting 16:03:14 (2108): wrapper (7.17.26016): starting 16:03:14 (2108): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 16:03:17 (2108): cmdock exited; CPU time 2.544776 16:03:17 (2108): called boinc_finish(0) </stderr_txt> ]]>
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