Task 82764895

Name	corona_RdRp_v2_sidock_01938450_r2_s-20_0
Workunit	54072563
Created	29 Aug 2024, 4:58:23 UTC
Sent	2 Sep 2024, 11:16:35 UTC
Report deadline	10 Sep 2024, 11:16:35 UTC
Received	5 Sep 2024, 1:06:27 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	60274
Run time	1 days 1 hours 31 min
CPU time	1 days 1 hours 29 min 47 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.12 MB
Peak swap size	200.36 MB
Peak disk usage	20.96 MB
Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
06:39:29 (7161): wrapper (7.17.26016): starting
06:39:30 (7161): wrapper (7.17.26016): starting
06:39:30 (7161): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61911463ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x77ad46e45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x77ad46e9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x77ad46e4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x77ad46e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x77ad46e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x77ad46ea8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x77ad46eab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x77ad46eadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61911465c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61911467b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x77ad46e45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x77ad46eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x77ad46ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x77ad46f2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x619114651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61911461e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x77ad46e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x77ad46e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61911461aa3a]

Exiting...
20:06:03 (90128): wrapper (7.17.26016): starting
20:06:03 (90128): wrapper (7.17.26016): starting
20:06:03 (90128): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:17:53 (1915): wrapper (7.17.26016): starting
21:17:53 (1915): wrapper (7.17.26016): starting
21:17:53 (1915): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:24:44 (1917): wrapper (7.17.26016): starting
23:24:44 (1917): wrapper (7.17.26016): starting
23:24:44 (1917): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x564d9b03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x744c18645320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x744c1869eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x744c1864526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x744c186288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x744c186297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x744c186a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x744c186ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x744c186add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x564d9b05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x564d9b07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x744c18645320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x744c186ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x744c186f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x744c1872972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x564d9b051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x564d9b01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x744c1862a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x744c1862a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x564d9b01aa3a]

Exiting...
20:16:07 (130372): wrapper (7.17.26016): starting
20:16:07 (130372): wrapper (7.17.26016): starting
20:16:07 (130372): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56888a23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7fec7d445320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7fec7d49eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7fec7d44526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7fec7d4288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7fec7d4297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7fec7d4a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7fec7d4ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7fec7d4add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56888a25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56888a27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7fec7d445320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7fec7d4ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fec7d4f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7fec7d52972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56888a251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56888a21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7fec7d42a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7fec7d42a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56888a21aa3a]

Exiting...
06:38:17 (5175): wrapper (7.17.26016): starting
06:38:17 (5175): wrapper (7.17.26016): starting
06:38:17 (5175): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ac3b63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73520c445320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x73520c49eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x73520c44526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x73520c4288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x73520c4297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x73520c4a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x73520c4ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x73520c4add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ac3b65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ac3b67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73520c445320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x73520c4ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x73520c4f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x73520c52972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ac3b651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ac3b61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x73520c42a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x73520c42a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ac3b61aa3a]

Exiting...
15:51:45 (1863): wrapper (7.17.26016): starting
15:51:45 (1863): wrapper (7.17.26016): starting
15:51:45 (1863): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x648c4c43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x765ebea45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x765ebea9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x765ebea4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x765ebea288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x765ebea297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x765ebeaa8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x765ebeaab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x765ebeaadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x648c4c45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x648c4c47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x765ebea45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x765ebeaecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x765ebeaf9a27]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x43)[0x765ebeb0ec63]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x648c4c451a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x648c4c41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x765ebea2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x765ebea2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x648c4c41aa3a]

Exiting...
16:03:14 (2103): wrapper (7.17.26016): starting
16:03:14 (2103): wrapper (7.17.26016): starting
16:03:14 (2103): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:03:17 (2103): cmdock exited; CPU time 2.532982
16:03:17 (2103): called boinc_finish(0)

</stderr_txt>
]]>