Task 82749668
| Name | corona_RdRp_v2_sidock_01930854_r2_s-20_0 |
| Workunit | 54057371 |
| Created | 29 Aug 2024, 4:42:12 UTC |
| Sent | 31 Aug 2024, 2:21:31 UTC |
| Report deadline | 8 Sep 2024, 2:21:31 UTC |
| Received | 19 Sep 2024, 23:50:07 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Aborted by user |
| Exit status | 203 (0x000000CB) EXIT_ABORTED_VIA_GUI |
| Computer ID | 54894 |
| Run time | 4 days 1 hours 5 min 53 sec |
| CPU time | 3 days 23 hours 50 min 46 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 7.06 GFLOPS |
| Application version | CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu |
| Peak working set size | 193.49 MB |
| Peak swap size | 199.43 MB |
| Peak disk usage | 22.37 MB |
Stderr output
<core_client_version>7.20.5</core_client_version> <![CDATA[ <message> aborted by user</message> <stderr_txt> 08:08:36 (2908000): wrapper (7.17.26016): starting 08:08:36 (2908000): wrapper (7.17.26016): starting 08:08:36 (2908000): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 10:47:41 (2923179): wrapper (7.17.26016): starting 10:47:41 (2923179): wrapper (7.17.26016): starting 10:47:41 (2923179): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 13:28:02 (2938339): wrapper (7.17.26016): starting 13:28:03 (2938339): wrapper (7.17.26016): starting 13:28:03 (2938339): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 14:49:04 (2946105): wrapper (7.17.26016): starting 14:49:04 (2946105): wrapper (7.17.26016): starting 14:49:04 (2946105): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 01:21:08 (3006033): wrapper (7.17.26016): starting 01:21:08 (3006033): wrapper (7.17.26016): starting 01:21:08 (3006033): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 10:46:57 (3059911): wrapper (7.17.26016): starting 10:46:57 (3059911): wrapper (7.17.26016): starting 10:46:57 (3059911): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 13:09:24 (3073837): wrapper (7.17.26016): starting 13:09:24 (3073837): wrapper (7.17.26016): starting 13:09:24 (3073837): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 13:24:24 (3075349): wrapper (7.17.26016): starting 13:24:24 (3075349): wrapper (7.17.26016): starting 13:24:24 (3075349): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 14:33:42 (3082147): wrapper (7.17.26016): starting 14:33:42 (3082147): wrapper (7.17.26016): starting 14:33:42 (3082147): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 16:43:59 (3094756): wrapper (7.17.26016): starting 16:43:59 (3094756): wrapper (7.17.26016): starting 16:43:59 (3094756): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 17:53:55 (3101562): wrapper (7.17.26016): starting 17:53:55 (3101562): wrapper (7.17.26016): starting 17:53:55 (3101562): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 18:26:16 (3104761): wrapper (7.17.26016): starting 18:26:16 (3104761): wrapper (7.17.26016): starting 18:26:16 (3104761): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:16:28 (3121341): wrapper (7.17.26016): starting 21:16:28 (3121341): wrapper (7.17.26016): starting 21:16:28 (3121341): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:41:26 (3123824): wrapper (7.17.26016): starting 21:41:26 (3123824): wrapper (7.17.26016): starting 21:41:26 (3123824): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 03:46:58 (3158805): wrapper (7.17.26016): starting 03:46:58 (3158805): wrapper (7.17.26016): starting 03:46:58 (3158805): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 14:09:53 (3218244): wrapper (7.17.26016): starting 14:09:53 (3218244): wrapper (7.17.26016): starting 14:09:53 (3218244): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 14:43:20 (3221532): wrapper (7.17.26016): starting 14:43:21 (3221532): wrapper (7.17.26016): starting 14:43:21 (3221532): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 16:33:13 (3232137): wrapper (7.17.26016): starting 16:33:13 (3232137): wrapper (7.17.26016): starting 16:33:13 (3232137): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 18:12:57 (3241841): wrapper (7.17.26016): starting 18:12:57 (3241841): wrapper (7.17.26016): starting 18:12:57 (3241841): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 18:30:28 (3243595): wrapper (7.17.26016): starting 18:30:29 (3243595): wrapper (7.17.26016): starting 18:30:29 (3243595): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 02:07:14 (3287637): wrapper (7.17.26016): starting 02:07:14 (3287637): wrapper (7.17.26016): starting 02:07:14 (3287637): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 04:24:05 (3300908): wrapper (7.17.26016): starting 04:24:06 (3300908): wrapper (7.17.26016): starting 04:24:06 (3300908): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 06:04:22 (3310586): wrapper (7.17.26016): starting 06:04:22 (3310586): wrapper (7.17.26016): starting 06:04:22 (3310586): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 07:55:10 (3321275): wrapper (7.17.26016): starting 07:55:10 (3321275): wrapper (7.17.26016): starting 07:55:10 (3321275): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:03:34 (3327862): wrapper (7.17.26016): starting 09:03:34 (3327862): wrapper (7.17.26016): starting 09:03:34 (3327862): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:41:59 (3331590): wrapper (7.17.26016): starting 09:41:59 (3331590): wrapper (7.17.26016): starting 09:41:59 (3331590): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 12:26:28 (3347469): wrapper (7.17.26016): starting 12:26:28 (3347469): wrapper (7.17.26016): starting 12:26:28 (3347469): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 16:49:00 (3372573): wrapper (7.17.26016): starting 16:49:00 (3372573): wrapper (7.17.26016): starting 16:49:00 (3372573): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 18:34:59 (3382721): wrapper (7.17.26016): starting 18:34:59 (3382721): wrapper (7.17.26016): starting 18:34:59 (3382721): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 18:55:16 (3384713): wrapper (7.17.26016): starting 18:55:16 (3384713): wrapper (7.17.26016): starting 18:55:16 (3384713): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 22:56:02 (3407761): wrapper (7.17.26016): starting 22:56:03 (3407761): wrapper (7.17.26016): starting 22:56:03 (3407761): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 01:06:31 (3420371): wrapper (7.17.26016): starting 01:06:31 (3420371): wrapper (7.17.26016): starting 01:06:31 (3420371): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 01:37:11 (3423362): wrapper (7.17.26016): starting 01:37:11 (3423362): wrapper (7.17.26016): starting 01:37:11 (3423362): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 02:46:06 (3429974): wrapper (7.17.26016): starting 02:46:06 (3429974): wrapper (7.17.26016): starting 02:46:06 (3429974): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 05:37:42 (3446486): wrapper (7.17.26016): starting 05:37:42 (3446486): wrapper (7.17.26016): starting 05:37:42 (3446486): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 06:18:38 (3450468): wrapper (7.17.26016): starting 06:18:38 (3450468): wrapper (7.17.26016): starting 06:18:38 (3450468): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 06:42:04 (3452826): wrapper (7.17.26016): starting 06:42:04 (3452826): wrapper (7.17.26016): starting 06:42:04 (3452826): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 06:48:45 (3453535): wrapper (7.17.26016): starting 06:48:45 (3453535): wrapper (7.17.26016): starting 06:48:45 (3453535): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 06:54:07 (3454086): wrapper (7.17.26016): starting 06:54:08 (3454086): wrapper (7.17.26016): starting 06:54:08 (3454086): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:24:33 (3469156): wrapper (7.17.26016): starting 09:24:33 (3469156): wrapper (7.17.26016): starting 09:24:33 (3469156): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 12:09:20 (3486092): wrapper (7.17.26016): starting 12:09:21 (3486092): wrapper (7.17.26016): starting 12:09:21 (3486092): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 14:21:49 (3499762): wrapper (7.17.26016): starting 14:21:49 (3499762): wrapper (7.17.26016): starting 14:21:49 (3499762): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (16 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5633cea3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f1dbc446050] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7f1dbc4a2e3a] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5633cea5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5633cea7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f1dbc446050] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x5633cea3aec0] /lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f1dbc446050] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f1dbc4d9485] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f1dbc4ddd93] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f1dbc509185] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5633cea51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5633cea1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f1dbc43124a] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f1dbc431305] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5633cea1aa3a] Exiting... 11:02:58 (3618248): wrapper (7.17.26016): starting 11:02:58 (3618248): wrapper (7.17.26016): starting 11:02:58 (3618248): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 14:15:50 (3638852): wrapper (7.17.26016): starting 14:15:50 (3638852): wrapper (7.17.26016): starting 14:15:50 (3638852): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55f52fe3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7ff7d2a0e050] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x1a)[0x7ff7d2a6ae3a] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55f52fe5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55f52fe7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7ff7d2a0e050] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7ff7d2aa1485] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7ff7d2aa5d93] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7ff7d2ad1185] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55f52fe51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55f52fe1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7ff7d29f924a] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7ff7d29f9305] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55f52fe1aa3a] Exiting... 20:02:47 (3671982): wrapper (7.17.26016): starting 20:02:47 (3671982): wrapper (7.17.26016): starting 20:02:47 (3671982): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:50:58 (1754): wrapper (7.17.26016): starting 19:50:58 (1754): wrapper (7.17.26016): starting 19:50:58 (1754): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55f43d43ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f936853e050] /lib/x86_64-linux-gnu/libc.so.6(+0x8ae2c)[0x7f936858ce2c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7f936853dfb2] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f9368528472] /lib/x86_64-linux-gnu/libc.so.6(+0x7f430)[0x7f9368581430] /lib/x86_64-linux-gnu/libc.so.6(+0x947aa)[0x7f93685967aa] /lib/x86_64-linux-gnu/libc.so.6(+0x96534)[0x7f9368598534] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7f936859ae8f] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55f43d45c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55f43d47b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f936853e050] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f93685d1485] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f93685d5d93] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f9368601185] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55f43d451adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55f43d41e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f936852924a] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f9368529305] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55f43d41aa3a] Exiting... 21:28:14 (1741): wrapper (7.17.26016): starting 21:28:14 (1741): wrapper (7.17.26016): starting 21:28:14 (1741): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55975183ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fbb064ee050] /lib/x86_64-linux-gnu/libc.so.6(+0x8ae2c)[0x7fbb0653ce2c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7fbb064edfb2] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fbb064d8472] /lib/x86_64-linux-gnu/libc.so.6(+0x7f430)[0x7fbb06531430] /lib/x86_64-linux-gnu/libc.so.6(+0x947aa)[0x7fbb065467aa] /lib/x86_64-linux-gnu/libc.so.6(+0x96534)[0x7fbb06548534] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7fbb0654ae8f] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55975185c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55975187b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fbb064ee050] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fbb06581485] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fbb06585d93] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7fbb065b1185] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x559751851adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55975181e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fbb064d924a] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fbb064d9305] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55975181aa3a] Exiting... 21:30:17 (1738): wrapper (7.17.26016): starting 21:30:17 (1738): wrapper (7.17.26016): starting 21:30:17 (1738): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x563f6f63ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f6c2e8f3050] /lib/x86_64-linux-gnu/libc.so.6(+0x8ae2c)[0x7f6c2e941e2c] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7f6c2e8f2fb2] /lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f6c2e8dd472] /lib/x86_64-linux-gnu/libc.so.6(+0x7f430)[0x7f6c2e936430] /lib/x86_64-linux-gnu/libc.so.6(+0x947aa)[0x7f6c2e94b7aa] /lib/x86_64-linux-gnu/libc.so.6(+0x96534)[0x7f6c2e94d534] /lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7f6c2e94fe8f] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x563f6f65c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x563f6f67b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f6c2e8f3050] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f6c2e986485] /lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f6c2e98ad93] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f6c2e9b6185] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x563f6f651adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x563f6f61e784] /lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f6c2e8de24a] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f6c2e8de305] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x563f6f61aa3a] Exiting... 21:40:34 (1758): wrapper (7.17.26016): starting 21:40:34 (1758): wrapper (7.17.26016): starting 21:40:34 (1758): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) </stderr_txt> ]]>
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