Task 82163990

Name corona_RdRp_v2_sidock_01787788_r1_s-20_0
Workunit 53552630
Created 2 Jul 2024, 4:45:58 UTC
Sent 4 Jul 2024, 19:12:23 UTC
Report deadline 10 Jul 2024, 19:12:23 UTC
Received 6 Jul 2024, 7:51:15 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 58409
Run time 21 hours 54 min 49 sec
CPU time 21 hours 52 min 22 sec
Validate state Valid
Credit 971.74
Device peak FLOPS 8.61 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.71 MB
Peak swap size 200.50 MB
Peak disk usage 20.87 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
22:12:59 (1921): wrapper (7.17.26016): starting
22:12:59 (1921): wrapper (7.17.26016): starting
22:12:59 (1921): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56474dc3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f8bc35e5520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f8bc36399fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f8bc35e5476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f8bc35cb7f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f8bc362c676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f8bc3643cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f8bc3645a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f8bc3648453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56474dc5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56474dc7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f8bc35e5520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f8bc36887f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f8bc368d677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f8bc36bef2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56474dc51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56474dc1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f8bc35ccd90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f8bc35cce40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56474dc1aa3a]

Exiting...
22:13:33 (1567): wrapper (7.17.26016): starting
22:13:34 (1567): wrapper (7.17.26016): starting
22:13:34 (1567): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:00:00 (17841): wrapper (7.17.26016): starting
22:00:01 (17841): wrapper (7.17.26016): starting
22:00:01 (17841): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:51:05 (17841): cmdock exited; CPU time 46179.735769
10:51:05 (17841): called boinc_finish(0)

</stderr_txt>
]]>


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