Task 82145786

Name	corona_RdRp_v2_sidock_01775996_r1_s-20_1
Workunit	53509046
Created	29 Jun 2024, 11:36:37 UTC
Sent	1 Jul 2024, 23:37:56 UTC
Report deadline	7 Jul 2024, 23:37:56 UTC
Received	4 Jul 2024, 21:30:10 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	19139
Run time	2 days 3 hours 14 min 19 sec
CPU time	2 days 2 hours 40 min 58 sec
Validate state	Valid
Credit	1,002.32
Device peak FLOPS	3.76 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.30 MB
Peak swap size	200.11 MB
Peak disk usage	20.72 MB

Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
00:23:37 (145291): wrapper (7.17.26016): starting
00:23:37 (145291): wrapper (7.17.26016): starting
00:23:37 (145291): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (19 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x562dbcee6f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f92f58bd420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f92f56fa00b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f92f56d9859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f92f574426e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f92f574c2fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f92f574db2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x562dbcf033dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x562dbcf228e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f92f56fa090]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x562dbcee1ec0]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f92f58bd420]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f92f579423f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f92f5799ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f92f57cca7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x562dbcef8adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x562dbcec5784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f92f56db083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x562dbcec1a3a]

Exiting...
09:14:28 (2197): wrapper (7.17.26016): starting
09:14:29 (2197): wrapper (7.17.26016): starting
09:14:29 (2197): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x562bd0ab3f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fbde08da420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7fbde076e6f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x562bd0ad03dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x562bd0aef8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fbde0717090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fbde07b123f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fbde07b6ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fbde07e9a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x562bd0ac5adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x562bd0a92784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fbde06f8083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x562bd0a8ea3a]

Exiting...
10:03:45 (2163): wrapper (7.17.26016): starting
10:03:45 (2163): wrapper (7.17.26016): starting
10:03:45 (2163): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:06:09 (2166): wrapper (7.17.26016): starting
17:06:09 (2166): wrapper (7.17.26016): starting
17:06:09 (2166): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
04:29:56 (2166): cmdock exited; CPU time 40596.214862
04:29:56 (2166): called boinc_finish(0)

</stderr_txt>
]]>