Task 82145492

Name	corona_RdRp_v2_sidock_01775613_r2_s-20_1
Workunit	53508281
Created	29 Jun 2024, 2:32:14 UTC
Sent	1 Jul 2024, 22:11:18 UTC
Report deadline	7 Jul 2024, 22:11:18 UTC
Received	4 Jul 2024, 14:38:47 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	19139
Run time	2 days 4 hours 37 min 37 sec
CPU time	2 days 3 hours 58 min 22 sec
Validate state	Valid
Credit	1,014.23
Device peak FLOPS	3.76 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.97 MB
Peak swap size	200.49 MB
Peak disk usage	20.72 MB

Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
16:12:31 (136054): wrapper (7.17.26016): starting
16:12:31 (136054): wrapper (7.17.26016): starting
16:12:31 (136054): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x558d11645f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7ff4b3c32420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7ff4b3a6f00b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7ff4b3a4e859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7ff4b3ab926e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7ff4b3ac12fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7ff4b3ac2b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x558d116623dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x558d116818e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7ff4b3a6f090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7ff4b3b0923f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7ff4b3b0eec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7ff4b3b41a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x558d11657adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x558d11624784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7ff4b3a50083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x558d11620a3a]

Exiting...
09:14:28 (2196): wrapper (7.17.26016): starting
09:14:29 (2196): wrapper (7.17.26016): starting
09:14:29 (2196): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55f3862dff8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f6e25666420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7f6e254fa6f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55f3862fc3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55f38631b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f6e254a3090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f6e2553d23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f6e25542ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f6e25575a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55f3862f1adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55f3862be784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f6e25484083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55f3862baa3a]

Exiting...
10:03:45 (2162): wrapper (7.17.26016): starting
10:03:45 (2162): wrapper (7.17.26016): starting
10:03:45 (2162): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:06:09 (2165): wrapper (7.17.26016): starting
17:06:09 (2165): wrapper (7.17.26016): starting
17:06:09 (2165): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:38:32 (2165): cmdock exited; CPU time 16126.058940
21:38:32 (2165): called boinc_finish(0)

</stderr_txt>
]]>