Task 82145257

Name	corona_RdRp_v2_sidock_01761711_r1_s-20_1
Workunit	53480476
Created	28 Jun 2024, 16:26:43 UTC
Sent	1 Jul 2024, 21:39:36 UTC
Report deadline	7 Jul 2024, 21:39:36 UTC
Received	5 Jul 2024, 3:46:47 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	19139
Run time	3 days 2 hours 56 min 53 sec
CPU time	3 days 2 hours 2 min 35 sec
Validate state	Valid
Credit	1,470.25
Device peak FLOPS	3.76 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.70 MB
Peak swap size	200.15 MB
Peak disk usage	20.62 MB

Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
06:37:43 (130017): wrapper (7.17.26016): starting
06:37:44 (130017): wrapper (7.17.26016): starting
06:37:44 (130017): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55c5bac32f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f6b2fe92420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f6b2fccf00b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f6b2fcae859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f6b2fd1926e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f6b2fd212fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f6b2fd22b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55c5bac4f3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55c5bac6e8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f6b2fccf090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f6b2fd6923f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f6b2fd6eec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f6b2fda1a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55c5bac44adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55c5bac11784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f6b2fcb0083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55c5bac0da3a]

Exiting...
09:14:28 (2195): wrapper (7.17.26016): starting
09:14:29 (2195): wrapper (7.17.26016): starting
09:14:29 (2195): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55a362d95f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f084be6b420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7f084bcff6f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55a362db23dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55a362dd18e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f084bca8090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f084bd4223f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f084bd47ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f084bd7aa7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55a362da7adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55a362d74784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f084bc89083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55a362d70a3a]

Exiting...
10:03:45 (2161): wrapper (7.17.26016): starting
10:03:45 (2161): wrapper (7.17.26016): starting
10:03:45 (2161): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:06:09 (2164): wrapper (7.17.26016): starting
17:06:09 (2164): wrapper (7.17.26016): starting
17:06:09 (2164): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:46:32 (2164): cmdock exited; CPU time 62894.548959
10:46:32 (2164): called boinc_finish(0)

</stderr_txt>
]]>