Task 82143702

Name	corona_RdRp_v2_sidock_01756598_r2_s-20_2
Workunit	53470251
Created	27 Jun 2024, 11:31:15 UTC
Sent	1 Jul 2024, 16:20:29 UTC
Report deadline	7 Jul 2024, 16:20:29 UTC
Received	7 Jul 2024, 11:15:58 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	59157
Run time	1 days 22 hours 12 min 57 sec
CPU time	1 days 22 hours 7 min 35 sec
Validate state	Valid
Credit	1,463.16
Device peak FLOPS	4.28 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.42 MB
Peak swap size	200.40 MB
Peak disk usage	20.59 MB
Stderr output

<core_client_version>7.16.16</core_client_version>
<![CDATA[
<stderr_txt>
12:49:48 (722161): wrapper (7.17.26016): starting
12:49:48 (722161): wrapper (7.17.26016): starting
12:49:48 (722161): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/18/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x561a8c43ff8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x13140)[0x7f5ec3aa4140]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7f5ec38f5ce1]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7f5ec38df537]
/lib/x86_64-linux-gnu/libc.so.6(+0x7a3e8)[0x7f5ec39373e8]
/lib/x86_64-linux-gnu/libc.so.6(+0x816da)[0x7f5ec393e6da]
/lib/x86_64-linux-gnu/libc.so.6(+0x82894)[0x7f5ec393f894]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x561a8c45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x561a8c47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x38d60)[0x7f5ec38f5d60]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x81)[0x7f5ec397f1e1]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f5ec39849c3]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f5ec39af6d5]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x561a8c451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x561a8c41e784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7f5ec38e0d0a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x561a8c41aa3a]

Exiting...
00:00:03 (805081): wrapper (7.17.26016): starting
00:00:04 (805081): wrapper (7.17.26016): starting
00:00:04 (805081): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/18/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ec7343ff8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x13140)[0x7f089bb71140]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7f089b9c2ce1]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7f089b9ac537]
/lib/x86_64-linux-gnu/libc.so.6(+0x7a3e8)[0x7f089ba043e8]
/lib/x86_64-linux-gnu/libc.so.6(+0x816da)[0x7f089ba0b6da]
/lib/x86_64-linux-gnu/libc.so.6(+0x82894)[0x7f089ba0c894]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ec7345c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ec7347b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x38d60)[0x7f089b9c2d60]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x81)[0x7f089ba4c1e1]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f089ba519c3]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f089ba7c6d5]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ec73451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ec7341e784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7f089b9add0a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ec7341aa3a]

Exiting...
03:45:03 (833255): wrapper (7.17.26016): starting
03:45:04 (833255): wrapper (7.17.26016): starting
03:45:04 (833255): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/18/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5610b483ff8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x13140)[0x7f7a8b848140]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7f7a8b699ce1]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7f7a8b683537]
/lib/x86_64-linux-gnu/libc.so.6(+0x7a3e8)[0x7f7a8b6db3e8]
/lib/x86_64-linux-gnu/libc.so.6(+0x816da)[0x7f7a8b6e26da]
/lib/x86_64-linux-gnu/libc.so.6(+0x82894)[0x7f7a8b6e3894]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5610b485c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5610b487b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x38d60)[0x7f7a8b699d60]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x81)[0x7f7a8b7231e1]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f7a8b7289c3]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f7a8b7536d5]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5610b4851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5610b481e784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7f7a8b684d0a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5610b481aa3a]

Exiting...
00:00:03 (984010): wrapper (7.17.26016): starting
00:00:03 (984010): wrapper (7.17.26016): starting
00:00:03 (984010): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/18/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x560978e3ff8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x13140)[0x7f7a8bf98140]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7f7a8bde9ce1]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7f7a8bdd3537]
/lib/x86_64-linux-gnu/libc.so.6(+0x7a3e8)[0x7f7a8be2b3e8]
/lib/x86_64-linux-gnu/libc.so.6(+0x816da)[0x7f7a8be326da]
/lib/x86_64-linux-gnu/libc.so.6(+0x82894)[0x7f7a8be33894]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x560978e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x560978e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x38d60)[0x7f7a8bde9d60]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x81)[0x7f7a8be731e1]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f7a8be789c3]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f7a8bea36d5]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x560978e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x560978e1e784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7f7a8bdd4d0a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x560978e1aa3a]

Exiting...
02:42:21 (1005900): wrapper (7.17.26016): starting
02:42:21 (1005900): wrapper (7.17.26016): starting
02:42:21 (1005900): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/18/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55d3b523ff8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x13140)[0x7f619fe43140]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7f619fc94ce1]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7f619fc7e537]
/lib/x86_64-linux-gnu/libc.so.6(+0x7a3e8)[0x7f619fcd63e8]
/lib/x86_64-linux-gnu/libc.so.6(+0x816da)[0x7f619fcdd6da]
/lib/x86_64-linux-gnu/libc.so.6(+0x82894)[0x7f619fcde894]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55d3b525c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55d3b527b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x38d60)[0x7f619fc94d60]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x81)[0x7f619fd1e1e1]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f619fd239c3]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f619fd4e6d5]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55d3b5251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55d3b521e784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7f619fc7fd0a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55d3b521aa3a]

Exiting...
03:45:04 (1013868): wrapper (7.17.26016): starting
03:45:04 (1013868): wrapper (7.17.26016): starting
03:45:04 (1013868): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/18/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:15:49 (1013868): cmdock exited; CPU time 34169.960460
13:15:49 (1013868): called boinc_finish(0)

</stderr_txt>
]]>