Task 82143652

Name	corona_RdRp_v2_sidock_01739496_r1_s-20_2
Workunit	53416046
Created	27 Jun 2024, 10:54:17 UTC
Sent	1 Jul 2024, 16:27:20 UTC
Report deadline	7 Jul 2024, 16:27:20 UTC
Received	4 Jul 2024, 6:22:12 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	19139
Run time	2 days 7 hours 52 min 7 sec
CPU time	2 days 7 hours 10 min 32 sec
Validate state	Valid
Credit	1,062.21
Device peak FLOPS	3.76 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.21 MB
Peak swap size	200.89 MB
Peak disk usage	20.37 MB

Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
05:11:06 (129365): wrapper (7.17.26016): starting
05:11:07 (129365): wrapper (7.17.26016): starting
05:11:07 (129365): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x557de3d31f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fc800abf420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fc8008fc00b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fc8008db859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7fc80094626e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7fc80094e2fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7fc80094fb2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x557de3d4e3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x557de3d6d8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fc8008fc090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fc80099623f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fc80099bec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fc8009cea7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x557de3d43adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x557de3d10784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fc8008dd083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x557de3d0ca3a]

Exiting...
09:14:28 (2194): wrapper (7.17.26016): starting
09:14:29 (2194): wrapper (7.17.26016): starting
09:14:29 (2194): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55d9d925df8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f3c08258420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7f3c080ec6f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55d9d927a3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55d9d92998e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f3c08095090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f3c0812f23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f3c08134ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f3c08167a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55d9d926fadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55d9d923c784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f3c08076083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55d9d9238a3a]

Exiting...
10:03:45 (2160): wrapper (7.17.26016): starting
10:03:45 (2160): wrapper (7.17.26016): starting
10:03:45 (2160): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:21:59 (2160): cmdock exited; CPU time 11735.047198
13:21:59 (2160): called boinc_finish(0)

</stderr_txt>
]]>