Task 82143271

Name corona_RdRp_v2_sidock_01771237_r1_s-20_1
Workunit 53499528
Created 27 Jun 2024, 5:11:20 UTC
Sent 1 Jul 2024, 15:47:10 UTC
Report deadline 7 Jul 2024, 15:47:10 UTC
Received 3 Jul 2024, 0:27:10 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 55871
Run time 12 hours 46 min 32 sec
CPU time 12 hours 45 min 47 sec
Validate state Valid
Credit 1,209.40
Device peak FLOPS 9.41 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.34 MB
Peak swap size 219.87 MB
Peak disk usage 20.59 MB

Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:26:34 (1295468): wrapper (7.17.26016): starting
04:26:34 (1295468): wrapper (7.17.26016): starting
04:26:34 (1295468): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56271163ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f087e23e6f0]
/lib64/libc.so.6(free+0x1e)[0x7f087e299cfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56271165c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56271167b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f087e23e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f087e2d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f087e2d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f087e304b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x562711651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56271161e784]
/lib64/libc.so.6(+0x29590)[0x7f087e229590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f087e229640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56271161aa3a]

Exiting...
05:25:04 (3195): wrapper (7.17.26016): starting
05:25:04 (3195): wrapper (7.17.26016): starting
05:25:04 (3195): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:26:58 (3195): cmdock exited; CPU time 43249.632747
20:26:58 (3195): called boinc_finish(0)

</stderr_txt>
]]>


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