Task 82142808

Name	corona_RdRp_v2_sidock_01770538_r1_s-20_1
Workunit	53498130
Created	26 Jun 2024, 20:08:23 UTC
Sent	1 Jul 2024, 15:36:19 UTC
Report deadline	7 Jul 2024, 15:36:19 UTC
Received	4 Jul 2024, 7:37:44 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	19139
Run time	2 days 9 hours 24 min 44 sec
CPU time	2 days 8 hours 43 min 36 sec
Validate state	Valid
Credit	1,105.69
Device peak FLOPS	3.76 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.17 MB
Peak swap size	199.92 MB
Peak disk usage	20.76 MB

Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
04:39:26 (128403): wrapper (7.17.26016): starting
04:39:27 (128403): wrapper (7.17.26016): starting
04:39:27 (128403): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5581feafaf8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f294a349420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f294a18600b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f294a165859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f294a1d026e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f294a1d82fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f294a1d9b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5581feb173dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5581feb368e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f294a186090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f294a22023f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f294a225ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f294a258a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5581feb0cadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5581fead9784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f294a167083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5581fead5a3a]

Exiting...
09:14:28 (2193): wrapper (7.17.26016): starting
09:14:29 (2193): wrapper (7.17.26016): starting
09:14:29 (2193): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55b0d6387f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f02ba7b3420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7f02ba6476f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55b0d63a43dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55b0d63c38e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f02ba5f0090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f02ba68a23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f02ba68fec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f02ba6c2a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55b0d6399adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55b0d6366784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f02ba5d1083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55b0d6362a3a]

Exiting...
10:03:45 (2159): wrapper (7.17.26016): starting
10:03:45 (2159): wrapper (7.17.26016): starting
10:03:45 (2159): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:37:31 (2159): cmdock exited; CPU time 16228.722059
14:37:31 (2159): called boinc_finish(0)

</stderr_txt>
]]>