Task 82142801

Name	corona_RdRp_v2_sidock_01740834_r1_s-20_2
Workunit	53438722
Created	26 Jun 2024, 19:40:09 UTC
Sent	1 Jul 2024, 15:36:19 UTC
Report deadline	7 Jul 2024, 15:36:19 UTC
Received	4 Jul 2024, 13:56:32 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	19139
Run time	2 days 20 hours 40 min 24 sec
CPU time	2 days 19 hours 50 min 50 sec
Validate state	Valid
Credit	1,325.00
Device peak FLOPS	3.76 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.26 MB
Peak swap size	200.79 MB
Peak disk usage	20.60 MB

Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
23:27:09 (125363): wrapper (7.17.26016): starting
23:27:10 (125363): wrapper (7.17.26016): starting
23:27:10 (125363): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (19 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55a6958bbf8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f1ea3bdb420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f1ea3a1800b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f1ea39f7859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f1ea3a6226e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f1ea3a6a2fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f1ea3a6bb2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55a6958d83dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55a6958f78e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f1ea3a18090]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x55a6958b6ec0]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f1ea3bdb420]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f1ea3ab223f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f1ea3ab7ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f1ea3aeaa7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55a6958cdadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55a69589a784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f1ea39f9083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55a695896a3a]

Exiting...
09:14:28 (2192): wrapper (7.17.26016): starting
09:14:29 (2192): wrapper (7.17.26016): starting
09:14:29 (2192): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55cfdb1b1f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f7206c1c420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7f7206ab06f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55cfdb1ce3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55cfdb1ed8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f7206a59090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f7206af323f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f7206af8ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f7206b2ba7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55cfdb1c3adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55cfdb190784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f7206a3a083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55cfdb18ca3a]

Exiting...
10:03:45 (2158): wrapper (7.17.26016): starting
10:03:45 (2158): wrapper (7.17.26016): starting
10:03:45 (2158): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:06:09 (2163): wrapper (7.17.26016): starting
17:06:09 (2163): wrapper (7.17.26016): starting
17:06:09 (2163): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:56:21 (2163): cmdock exited; CPU time 13606.269044
20:56:21 (2163): called boinc_finish(0)

</stderr_txt>
]]>