Task 82118852

Name corona_RdRp_v2_sidock_01764246_r1_s-20_1
Workunit 53485546
Created 23 Jun 2024, 22:13:03 UTC
Sent 1 Jul 2024, 6:29:58 UTC
Report deadline 7 Jul 2024, 6:29:58 UTC
Received 4 Jul 2024, 20:57:27 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 50430
Run time 1 days 19 hours 28 min 10 sec
CPU time 1 days 19 hours 23 min 53 sec
Validate state Valid
Credit 1,550.82
Device peak FLOPS 6.99 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.12 MB
Peak swap size 200.93 MB
Peak disk usage 20.69 MB

Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
02:43:44 (2131027): wrapper (7.17.26016): starting
02:43:44 (2131027): wrapper (7.17.26016): starting
02:43:44 (2131027): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56546243ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7315d3042520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7315d30a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56546245c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56546247b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7315d3042520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7315d30e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7315d30ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7315d311bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x565462451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56546241e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7315d3029d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7315d3029e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56546241aa3a]

Exiting...
08:00:04 (2134590): wrapper (7.17.26016): starting
08:00:04 (2134590): wrapper (7.17.26016): starting
08:00:04 (2134590): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x631583c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fa593642520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7fa5936a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x631583c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x631583c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fa593642520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7fa5936e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7fa5936ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fa59371bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x631583c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x631583c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fa593629d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fa593629e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x631583c1aa3a]

Exiting...
16:00:03 (2139622): wrapper (7.17.26016): starting
16:00:03 (2139622): wrapper (7.17.26016): starting
16:00:03 (2139622): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55605943ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7351bec42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7351beca53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55605945c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55605947b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7351bec42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7351bece57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7351becea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7351bed1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x556059451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55605941e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7351bec29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7351bec29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55605941aa3a]

Exiting...
00:00:07 (2144840): wrapper (7.17.26016): starting
00:00:07 (2144840): wrapper (7.17.26016): starting
00:00:07 (2144840): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5f1ab583ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x74bde8842520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x74bde88a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5f1ab585c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5f1ab587b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x74bde8842520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x74bde88e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x74bde88ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x74bde891bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5f1ab5851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5f1ab581e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x74bde8829d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x74bde8829e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5f1ab581aa3a]

Exiting...
08:00:03 (2150508): wrapper (7.17.26016): starting
08:00:03 (2150508): wrapper (7.17.26016): starting
08:00:03 (2150508): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6099ce03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f22b0e42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7f22b0ea53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6099ce05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6099ce07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f22b0e42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f22b0ee57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f22b0eea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f22b0f1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6099ce051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6099ce01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f22b0e29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f22b0e29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6099ce01aa3a]

Exiting...
16:00:04 (2155493): wrapper (7.17.26016): starting
16:00:04 (2155493): wrapper (7.17.26016): starting
16:00:04 (2155493): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:57:16 (2155493): cmdock exited; CPU time 24982.542445
22:57:16 (2155493): called boinc_finish(0)

</stderr_txt>
]]>


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