Task 82115815

Name	corona_RdRp_v2_sidock_01779891_r2_s-20_0
Workunit	53516837
Created	21 Jun 2024, 16:38:10 UTC
Sent	30 Jun 2024, 21:22:07 UTC
Report deadline	6 Jul 2024, 21:22:07 UTC
Received	4 Jul 2024, 21:38:08 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	19974
Run time	1 days 3 hours 49 min 45 sec
CPU time	1 days 3 hours 32 min 50 sec
Validate state	Valid
Credit	1,570.47
Device peak FLOPS	8.25 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.75 MB
Peak swap size	200.93 MB
Peak disk usage	20.56 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
23:22:12 (34689): wrapper (7.17.26016): starting
23:22:12 (34689): wrapper (7.17.26016): starting
23:22:12 (34689): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
08:11:56 (8322): wrapper (7.17.26016): starting
08:11:57 (8322): wrapper (7.17.26016): starting
08:11:57 (8322): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5609d803ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f0c66a31ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f0c66a98d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5609d805c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5609d807b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f0c66a31ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f0c66ad3f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f0c66adfd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f0c66b0abda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5609d8051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5609d801e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f0c66a1ac88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f0c66a1ad4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5609d801aa3a]

Exiting...
22:27:15 (18892): wrapper (7.17.26016): starting
22:27:15 (18892): wrapper (7.17.26016): starting
22:27:15 (18892): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55e95563ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f1536940ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f15369a7d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55e95565c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55e95567b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f1536940ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f15369e2f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f15369eed77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f1536a19bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55e955651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55e95561e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f1536929c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f1536929d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55e95561aa3a]

Exiting...
07:58:20 (8319): wrapper (7.17.26016): starting
07:58:20 (8319): wrapper (7.17.26016): starting
07:58:20 (8319): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
08:00:24 (11064): wrapper (7.17.26016): starting
08:00:24 (11064): wrapper (7.17.26016): starting
08:00:24 (11064): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:54:32 (6477): wrapper (7.17.26016): starting
16:54:32 (6477): wrapper (7.17.26016): starting
16:54:32 (6477): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5583f563ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fb48fcbeae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7fb48fd25d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5583f565c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5583f567b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fb48fcbeae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fb48fd60f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fb48fd6cd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fb48fd97bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5583f5651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5583f561e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fb48fca7c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fb48fca7d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5583f561aa3a]

Exiting...
08:58:35 (6494): wrapper (7.17.26016): starting
08:58:35 (6494): wrapper (7.17.26016): starting
08:58:35 (6494): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56016b43ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f97fdde4ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f97fde4bd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56016b45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56016b47b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f97fdde4ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f97fde86f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f97fde92d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f97fdebdbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56016b451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56016b41e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f97fddcdc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f97fddcdd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56016b41aa3a]

Exiting...
11:53:35 (6469): wrapper (7.17.26016): starting
11:53:35 (6469): wrapper (7.17.26016): starting
11:53:35 (6469): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5575e3c3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7ff95193aae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7ff9519a1d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5575e3c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5575e3c7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7ff95193aae0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x5575e3c3aec0]
/usr/lib/libc.so.6(+0x3cae0)[0x7ff95193aae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7ff9519dcf43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7ff9519e8d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7ff951a13bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5575e3c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5575e3c1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7ff951923c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7ff951923d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5575e3c1aa3a]

Exiting...
14:13:33 (7827): wrapper (7.17.26016): starting
14:13:33 (7827): wrapper (7.17.26016): starting
14:13:33 (7827): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:16:59 (40220): wrapper (7.17.26016): starting
14:16:59 (40220): wrapper (7.17.26016): starting
14:16:59 (40220): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55d7e0a3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f295b332ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f295b399d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55d7e0a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55d7e0a7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f295b332ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f295b3d4f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f295b3e0d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f295b40bbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55d7e0a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55d7e0a1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f295b31bc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f295b31bd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55d7e0a1aa3a]

Exiting...
21:40:40 (7947): wrapper (7.17.26016): starting
21:40:41 (7947): wrapper (7.17.26016): starting
21:40:41 (7947): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ce4ea3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f0c67678ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f0c676dfd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ce4ea5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ce4ea7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f0c67678ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f0c6771af43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f0c67726d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f0c67751bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ce4ea51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ce4ea1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f0c67661c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f0c67661d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ce4ea1aa3a]

Exiting...
08:00:47 (8063): wrapper (7.17.26016): starting
08:00:47 (8063): wrapper (7.17.26016): starting
08:00:47 (8063): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:37:57 (8063): cmdock exited; CPU time 55412.049839
23:37:57 (8063): called boinc_finish(0)

</stderr_txt>
]]>