Task 82113537

Name corona_RdRp_v2_sidock_01778751_r1_s-20_0
Workunit 53514556
Created 21 Jun 2024, 16:35:59 UTC
Sent 30 Jun 2024, 10:48:20 UTC
Report deadline 6 Jul 2024, 10:48:20 UTC
Received 3 Jul 2024, 10:10:35 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 19139
Run time 2 days 6 hours 54 min 26 sec
CPU time 2 days 6 hours 15 min 9 sec
Validate state Valid
Credit 1,050.11
Device peak FLOPS 3.76 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.87 MB
Peak swap size 200.45 MB
Peak disk usage 20.39 MB

Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
10:11:40 (113619): wrapper (7.17.26016): starting
10:11:41 (113619): wrapper (7.17.26016): starting
10:11:41 (113619): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55fdceb9ff8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f66adca3420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f66adae000b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f66adabf859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f66adb2a26e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f66adb322fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f66adb33b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55fdcebbc3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55fdcebdb8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f66adae0090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f66adb7a23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f66adb7fec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f66adbb2a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55fdcebb1adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55fdceb7e784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f66adac1083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55fdceb7aa3a]

Exiting...
09:14:28 (2189): wrapper (7.17.26016): starting
09:14:29 (2189): wrapper (7.17.26016): starting
09:14:29 (2189): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:10:24 (2189): cmdock exited; CPU time 28176.930052
17:10:24 (2189): called boinc_finish(0)

</stderr_txt>
]]>


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