Task 82112558

Name corona_RdRp_v2_sidock_01778257_r2_s-20_0
Workunit 53513569
Created 21 Jun 2024, 16:35:05 UTC
Sent 30 Jun 2024, 6:22:56 UTC
Report deadline 6 Jul 2024, 6:22:56 UTC
Received 3 Jul 2024, 14:24:20 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 19139
Run time 3 days 3 hours 30 min 18 sec
CPU time 3 days 2 hours 41 min 29 sec
Validate state Valid
Credit 1,428.71
Device peak FLOPS 3.76 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.19 MB
Peak swap size 200.85 MB
Peak disk usage 20.55 MB

Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
17:48:12 (104122): wrapper (7.17.26016): starting
17:48:12 (104122): wrapper (7.17.26016): starting
17:48:12 (104122): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5617b2e1bf8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fe49d134420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fe49cf7100b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fe49cf50859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7fe49cfbb26e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7fe49cfc32fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7fe49cfc4b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5617b2e383dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5617b2e578e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fe49cf71090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fe49d00b23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fe49d010ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fe49d043a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5617b2e2dadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5617b2dfa784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fe49cf52083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5617b2df6a3a]

Exiting...
09:14:28 (2188): wrapper (7.17.26016): starting
09:14:29 (2188): wrapper (7.17.26016): starting
09:14:29 (2188): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:24:07 (2188): cmdock exited; CPU time 43233.841036
21:24:07 (2188): called boinc_finish(0)

</stderr_txt>
]]>


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