Task 82105478

Name corona_RdRp_v2_sidock_01774733_r2_s-20_0
Workunit 53506521
Created 21 Jun 2024, 16:28:25 UTC
Sent 28 Jun 2024, 17:20:29 UTC
Report deadline 4 Jul 2024, 17:20:29 UTC
Received 29 Jun 2024, 22:25:29 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 18775
Run time 1 days 4 hours 3 min 51 sec
CPU time 1 days 3 hours 58 min 42 sec
Validate state Valid
Credit 1,227.36
Device peak FLOPS 6.24 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.57 MB
Peak swap size 201.25 MB
Peak disk usage 20.59 MB

Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
12:58:05 (26421): wrapper (7.17.26016): starting
12:58:05 (26421): wrapper (7.17.26016): starting
12:58:05 (26421): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/kle1boinc/BOINC/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x557e90747f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f977eddc420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f977ec1900b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f977ebf8859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f977ec6326e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f977ec6b2fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f977ec6cb2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x557e907643dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x557e907838e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f977ec19090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f977ecb323f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f977ecb8ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f977eceba7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x557e90759adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x557e90726784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f977ebfa083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x557e90722a3a]

Exiting...
16:37:27 (2172): wrapper (7.17.26016): starting
16:37:27 (2172): wrapper (7.17.26016): starting
16:37:27 (2172): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/kle1boinc/BOINC/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:25:12 (2172): cmdock exited; CPU time 88991.121397
17:25:12 (2172): called boinc_finish(0)

</stderr_txt>
]]>


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