Task 82102283

Name corona_RdRp_v2_sidock_01773128_r2_s-20_0
Workunit 53503311
Created 21 Jun 2024, 16:25:28 UTC
Sent 27 Jun 2024, 23:20:06 UTC
Report deadline 3 Jul 2024, 23:20:06 UTC
Received 28 Jun 2024, 22:03:45 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 21 hours 14 min 7 sec
CPU time 21 hours 12 min 41 sec
Validate state Valid
Credit 782.31
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.39 MB
Peak swap size 199.91 MB
Peak disk usage 20.84 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
03:10:26 (21047): wrapper (7.17.26016): starting
03:10:26 (21047): wrapper (7.17.26016): starting
03:10:26 (21047): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55bdd64b6f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7f375e6b43c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f375e4f103b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f375e4d0859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7f375e53b29e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7f375e54332c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7f375e544b5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55bdd64d33dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55bdd64f28e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7f375e4f10c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f375e58b26f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f375e590ef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f375e5c388f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55bdd64c8adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55bdd6495784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f375e4d20b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55bdd6491a3a]

Exiting...
13:55:03 (4890): wrapper (7.17.26016): starting
13:55:03 (4890): wrapper (7.17.26016): starting
13:55:03 (4890): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:03:36 (4890): cmdock exited; CPU time 40045.882047
01:03:36 (4890): called boinc_finish(0)

</stderr_txt>
]]>


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