Task 82101870

Name corona_RdRp_v2_sidock_01772920_r1_s-20_0
Workunit 53502894
Created 21 Jun 2024, 16:25:03 UTC
Sent 27 Jun 2024, 21:01:50 UTC
Report deadline 3 Jul 2024, 21:01:50 UTC
Received 29 Jun 2024, 4:12:33 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 4 hours 59 min 54 sec
CPU time 1 days 4 hours 59 min 54 sec
Validate state Valid
Credit 1,104.03
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.27 MB
Peak swap size 199.81 MB
Peak disk usage 20.71 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
01:35:10 (19333): wrapper (7.17.26016): starting
01:35:10 (19333): wrapper (7.17.26016): starting
01:35:10 (19333): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5591ecc94f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7ffb0c70e3c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7ffb0c54b03b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7ffb0c52a859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7ffb0c59529e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7ffb0c59d32c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7ffb0c59eb5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5591eccb13dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5591eccd08e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7ffb0c54b0c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7ffb0c5e526f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7ffb0c5eaef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7ffb0c61d88f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5591ecca6adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5591ecc73784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7ffb0c52c0b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5591ecc6fa3a]

Exiting...
13:55:03 (4889): wrapper (7.17.26016): starting
13:55:03 (4889): wrapper (7.17.26016): starting
13:55:03 (4889): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
07:12:24 (4889): cmdock exited; CPU time 62140.418770
07:12:24 (4889): called boinc_finish(0)

</stderr_txt>
]]>


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